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LOCUS JQ282141 1268 bp DNA linear VRL 18-JAN-2012
DEFINITION HIV-2 isolate 162071 from Portugal pol protein (pol) gene, partial
cds
ACCESSION JQ282141
VERSION JQ282141.1 GI:372124953
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1268)
Show all sequences for reference 1
AUTHORS Faria,N.R., Hodges-Mameletzis,I., Silva,J.C., Rodes,B., Erasmus,S.,
Paolucci,S., Ruelle,J., Pieniazek,D., Taveira,N., Trevino,A.,
Goncalves,M.F., Jallow,S., Xu,L., Camacho,R.J., Soriano,V.,
Goubau,P., de Sousa,J.D., Vandamme,A.-M., Suchard,M.A. and Lemey,P.
TITLE Phylogeographical footprint of colonial history in the global
dispersal of human immunodeficiency virus type 2 group A.
JOURNAL J Gen Virol. 2012 Apr;93(Pt 4):889-99. Epub 2011 Dec 21.
PUBMED 22190015
REFERENCE 2 (bases 1 to 1268)
Show all sequences for reference 2
AUTHORS Silva,J.C., Goncalves,M.F. and Camacho,R.J.
TITLE Direct Submission
JOURNAL Submitted (12-DEC-2011) Centro Hospitalar de Lisboa Ocidental,
Laboratorio de Biologia Molecular, Rua da Junqueira, 126, Lisboa
1349-019, Portugal
COMMENT ##Assembly-Data-START## Assembly Method SeqScape v. 2.5 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1268
/organism="Human immunodeficiency virus 2"
/proviral="Human immunodeficiency virus 2"
/mol_type="genomic DNA"
/isolate="162071"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Portugal"
/collection_date="13-May-2008"
/note="group: A"
gene <1..>1268
/gene="pol"
CDS <1..>1268
/gene="pol"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="AEX87886.1"
/db_xref="GI:372124954"
/translation="PSSRATGEIYAAREXAERTEGQTLQGSNGGLTAPRAGRXSIXGB
DRGLAXPQFSLWQRPVVTAYIEXQPXEVLLDTGADDSIVAGIELGCNYSPKIVGGIGG
FINTKEYKNVEIEVLGKRVRATIMTGDTPINIFGRNVLTALGMSLNLPVAKIEPIKIM
LKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIRKRTKN
KWRMLIDFRXLNRVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIPLHEXFRQY
TAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANPDVILIQYMD
DILIASDRTDLEHDRXVLQLKELLNGLGFSTPDEKFQKXPPYHWMGYELWPTKWKLQK
IQLPQKEVWTVNDIQKLVGVLNWAAHLYPG"
BASE COUNT 456 a 247 c 279 g 240 t 46 other
ORIGIN
1 gacccagcag tagagctact ggagaaatat atgcagcaag ggagraagca gaaagaacag
61 agggacagac cttacaagga agtaatggag gacttactgc acctcgagca gggagagrct
121 ccataygggg aracgacaga ggacttgctg yccctcaatt ctctctttgg caaagaccag
181 tagtcacagc atacatygag rgycagccwg yagaagtttt actagacaca ggggctgayg
241 actcaatagt agcaggaata gagttaggrt gcaattatag tccaaaaata gtaggrggaa
301 tagggggatt cataaatacc aaggaatata aaaatgtaga aatagaagtc ctaggtaaaa
361 gggtaagggc caccataatg acrggcgata ccccaatyaa catttttggc agraatgttc
421 tgacagcytt aggcatgtca ctaaatttac cagtcgccaa gatagaacca ataaaaataa
481 tgctaaarcc aggaaaggat ggaccaaaay tgaggcagtg gcccttaaca aaagaaaaaa
541 tagaagcact aaaagagatc tgtgaaaaaa tggaaaagga aggccarcta gaggaagcac
601 ctccaactaa tccttacaat acccccacat tcgcaatcag gaaaaggacc aaaaacaaat
661 ggaggatgct aatagatttc agagamctaa acagggtaac ccaagatttc acagaaattc
721 agttgggaat tccacaccca gcaggattgg ccaagaagag aagaattact gtaytagatg
781 trggagatgc ttacttytcc ataccwctac atgaagawtt tagacartat actgcattya
841 ctctaccatc agtraacaat gcagaaccag gaaaaagata tatatayaar gtcttgccac
901 agggatggaa gggatcacca gcaatttttc aacacacaat gaggcargtc ttagaaccat
961 tcagaaaagc aaacccagat gtcattctca ttcagtacat ggatgayatc ctgatagcya
1021 gcgacaggac agacytagaa catgacagag yggtcctgca gctraaggaa cttctaaatg
1081 gcctaggatt ytctaccccm gatgagaagt tccaaaaagm ccctccrtac cactggatgg
1141 gctatgarct atggccaact aaatggaagt tgcagaaaat acarttgccc caaaargagg
1201 tatggacagt caatgacatc caaaaattag trggygtcct aaattgggca gcacacctct
1261 acccgggg
//
last modified: Tue May 31 10:56 2022