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LOCUS	    JQ282141		    1268 bp    DNA     linear	VRL 18-JAN-2012
DEFINITION  HIV-2 isolate 162071 from Portugal pol protein (pol) gene, partial
	    cds
ACCESSION   JQ282141
VERSION     JQ282141.1 GI:372124953
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1268)
            Show all sequences for reference 1
  AUTHORS   Faria,N.R., Hodges-Mameletzis,I., Silva,J.C., Rodes,B., Erasmus,S.,
	    Paolucci,S., Ruelle,J., Pieniazek,D., Taveira,N., Trevino,A.,
	    Goncalves,M.F., Jallow,S., Xu,L., Camacho,R.J., Soriano,V.,
	    Goubau,P., de Sousa,J.D., Vandamme,A.-M., Suchard,M.A. and Lemey,P.
  TITLE     Phylogeographical footprint of colonial history in the global
	    dispersal of human immunodeficiency virus type 2 group A.
  JOURNAL   J Gen Virol. 2012 Apr;93(Pt 4):889-99. Epub 2011 Dec 21.
  PUBMED    22190015
REFERENCE   2 (bases 1 to 1268)
            Show all sequences for reference 2
  AUTHORS   Silva,J.C., Goncalves,M.F. and Camacho,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-DEC-2011) Centro Hospitalar de Lisboa Ocidental,
	    Laboratorio de Biologia Molecular, Rua da Junqueira, 126, Lisboa
	    1349-019, Portugal
COMMENT     ##Assembly-Data-START## Assembly Method SeqScape v. 2.5 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1268
		     /organism="Human immunodeficiency virus 2"
		     /proviral="Human immunodeficiency virus 2"
		     /mol_type="genomic DNA"
		     /isolate="162071"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Portugal"
		     /collection_date="13-May-2008"
		     /note="group: A"
     gene	     <1..>1268
		     /gene="pol"
     CDS	     <1..>1268
		     /gene="pol"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEX87886.1"
		     /db_xref="GI:372124954"
		     /translation="PSSRATGEIYAAREXAERTEGQTLQGSNGGLTAPRAGRXSIXGB
		     DRGLAXPQFSLWQRPVVTAYIEXQPXEVLLDTGADDSIVAGIELGCNYSPKIVGGIGG
		     FINTKEYKNVEIEVLGKRVRATIMTGDTPINIFGRNVLTALGMSLNLPVAKIEPIKIM
		     LKPGKDGPKLRQWPLTKEKIEALKEICEKMEKEGQLEEAPPTNPYNTPTFAIRKRTKN
		     KWRMLIDFRXLNRVTQDFTEIQLGIPHPAGLAKKRRITVLDVGDAYFSIPLHEXFRQY
		     TAFTLPSVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANPDVILIQYMD
		     DILIASDRTDLEHDRXVLQLKELLNGLGFSTPDEKFQKXPPYHWMGYELWPTKWKLQK
		     IQLPQKEVWTVNDIQKLVGVLNWAAHLYPG"
BASE COUNT	456 a	 247 c	  279 g    240 t     46 other
ORIGIN
       1 gacccagcag tagagctact ggagaaatat atgcagcaag ggagraagca gaaagaacag 
      61 agggacagac cttacaagga agtaatggag gacttactgc acctcgagca gggagagrct 
     121 ccataygggg aracgacaga ggacttgctg yccctcaatt ctctctttgg caaagaccag 
     181 tagtcacagc atacatygag rgycagccwg yagaagtttt actagacaca ggggctgayg 
     241 actcaatagt agcaggaata gagttaggrt gcaattatag tccaaaaata gtaggrggaa 
     301 tagggggatt cataaatacc aaggaatata aaaatgtaga aatagaagtc ctaggtaaaa 
     361 gggtaagggc caccataatg acrggcgata ccccaatyaa catttttggc agraatgttc 
     421 tgacagcytt aggcatgtca ctaaatttac cagtcgccaa gatagaacca ataaaaataa 
     481 tgctaaarcc aggaaaggat ggaccaaaay tgaggcagtg gcccttaaca aaagaaaaaa 
     541 tagaagcact aaaagagatc tgtgaaaaaa tggaaaagga aggccarcta gaggaagcac 
     601 ctccaactaa tccttacaat acccccacat tcgcaatcag gaaaaggacc aaaaacaaat 
     661 ggaggatgct aatagatttc agagamctaa acagggtaac ccaagatttc acagaaattc 
     721 agttgggaat tccacaccca gcaggattgg ccaagaagag aagaattact gtaytagatg 
     781 trggagatgc ttacttytcc ataccwctac atgaagawtt tagacartat actgcattya 
     841 ctctaccatc agtraacaat gcagaaccag gaaaaagata tatatayaar gtcttgccac 
     901 agggatggaa gggatcacca gcaatttttc aacacacaat gaggcargtc ttagaaccat 
     961 tcagaaaagc aaacccagat gtcattctca ttcagtacat ggatgayatc ctgatagcya 
    1021 gcgacaggac agacytagaa catgacagag yggtcctgca gctraaggaa cttctaaatg 
    1081 gcctaggatt ytctaccccm gatgagaagt tccaaaaagm ccctccrtac cactggatgg 
    1141 gctatgarct atggccaact aaatggaagt tgcagaaaat acarttgccc caaaargagg 
    1201 tatggacagt caatgacatc caaaaattag trggygtcct aaattgggca gcacacctct 
    1261 acccgggg
//
last modified: Tue May 31 10:56 2022


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