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LOCUS JQ282090 1122 bp DNA linear VRL 18-JAN-2012
DEFINITION HIV-2 isolate 34399 from Portugal pol protein (pol) gene, partial
cds
ACCESSION JQ282090
VERSION JQ282090.1 GI:372124852
KEYWORDS .
SOURCE Human immunodeficiency virus 2 (HIV-2)
ORGANISM Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1122)
Show all sequences for reference 1
AUTHORS Faria,N.R., Hodges-Mameletzis,I., Silva,J.C., Rodes,B., Erasmus,S.,
Paolucci,S., Ruelle,J., Pieniazek,D., Taveira,N., Trevino,A.,
Goncalves,M.F., Jallow,S., Xu,L., Camacho,R.J., Soriano,V.,
Goubau,P., de Sousa,J.D., Vandamme,A.-M., Suchard,M.A. and Lemey,P.
TITLE Phylogeographical footprint of colonial history in the global
dispersal of human immunodeficiency virus type 2 group A.
JOURNAL J Gen Virol. 2012 Apr;93(Pt 4):889-99. Epub 2011 Dec 21.
PUBMED 22190015
REFERENCE 2 (bases 1 to 1122)
Show all sequences for reference 2
AUTHORS Silva,J.C., Goncalves,M.F. and Camacho,R.J.
TITLE Direct Submission
JOURNAL Submitted (12-DEC-2011) Centro Hospitalar de Lisboa Ocidental,
Laboratorio de Biologia Molecular, Rua da Junqueira, 126, Lisboa
1349-019, Portugal
COMMENT ##Assembly-Data-START## Assembly Method SeqScape v. 2.5 Sequencing
Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..1122
/organism="Human immunodeficiency virus 2"
/proviral="Human immunodeficiency virus 2"
/mol_type="genomic DNA"
/isolate="34399"
/host="Homo sapiens"
/db_xref="taxon:11709"
/country="Portugal"
/collection_date="22-Jun-1999"
/note="group: A"
gene <1..>1122
/gene="pol"
CDS <1..>1122
/gene="pol"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="AEX87836.1"
/db_xref="GI:372124853"
/translation="XDRGLAAPQFSLWKRPVVTAHIEGQPVEVLLDTGADDSIVAGIE
LGSNYSPKIVGGIGGFINTKEYKNVEIKVLNKKVRATIMTGDTPINIFGRNILTALGM
SLNLPVAKIEPIKVTLKPGKDGPKLRQWPLTXEKIEALKEICEKMEKEGQLEEAPPTN
PYNTPTFAIKKKAKTKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVG
DAYFSIPLDENFRQYTAFTLPSTNNAEPGKRYIYKVLPQGWKGSPAIFQFXMRQILEP
FRKANQDVIIIQYMDDILIASDRTDLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPYR
WMGYELWPTKWKLQKIQLPQKEVWTVNDIXKLVGVLNWA"
BASE COUNT 426 a 208 c 228 g 229 t 31 other
ORIGIN
1 gagrcgacag aggacttgct gcacctcaat tctctctttg gaaaagacca gtagtcacag
61 cacacattga gggtcagcca gtagaagttc tattagacac aggggctgac gactcaatag
121 tagcagggat agaattagga agcaattata gyccaaaaat agtaggagga atagggggat
181 tcataaatac caaggaatay aaaaatgtag aaataaaagt actaaataag aaagtaagag
241 ccaccataat gacgggtgat accccaatta atatttttgg cagaaatatt ctgacagcct
301 trggcatgtc attaaaycta ccagtygcca agatagaacc aataaaggta acactgaagc
361 caggaaaaga tggaccaaaa ctgagacart ggcccttrac aaragaaaaa atagaagcac
421 taaargaaat ctgtgaraaa atggaaaarg aaggccagct agargaagca cctccaacta
481 atccatayaa tacccccaca tttgcaatta agaaaaaggc aaaaaccaaa tggaggatgc
541 taatagactt yagagaacta aacaaggtaa ctcaagattt cacagaaatt cagttaggaa
601 ttccacaccc agcaggatta gccaagaaaa gaagratcac tgtactagat gtrggagatg
661 cttacttytc cataccacta gatgaaaatt ttagacagta tactgcattc accctaccat
721 caacgaacaa tgcagaacca ggaaaaagat atatatataa rgtcttacca cagggatgga
781 arggktcacc agcaatyttt caattcayga tgaggcagat yttagaaccy ttcagaaaag
841 caaaccagga tgtcattatc attcagtaca tggatgatat cttaatagcy agtgacagga
901 cagatttrga acatgacaar gtagtcctgc arttaaagga acttctaaat ggcctaggat
961 tttccacccc agatgagaag ttccaaaarg accctccata ccgatggatg ggctatgaac
1021 tgtggccgac taaatggaag ctgcagaaaa tacagttgcc ccaaaaagaa gtatggacag
1081 tcaatgacat ccamaagcta gtgggtgtcc tgaattgggc ag
//
last modified: Tue May 31 10:56 2022