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LOCUS	    JQ282090		    1122 bp    DNA     linear	VRL 18-JAN-2012
DEFINITION  HIV-2 isolate 34399 from Portugal pol protein (pol) gene, partial
	    cds
ACCESSION   JQ282090
VERSION     JQ282090.1 GI:372124852
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 2 (HIV-2)
  ORGANISM  Human immunodeficiency virus 2 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1122)
            Show all sequences for reference 1
  AUTHORS   Faria,N.R., Hodges-Mameletzis,I., Silva,J.C., Rodes,B., Erasmus,S.,
	    Paolucci,S., Ruelle,J., Pieniazek,D., Taveira,N., Trevino,A.,
	    Goncalves,M.F., Jallow,S., Xu,L., Camacho,R.J., Soriano,V.,
	    Goubau,P., de Sousa,J.D., Vandamme,A.-M., Suchard,M.A. and Lemey,P.
  TITLE     Phylogeographical footprint of colonial history in the global
	    dispersal of human immunodeficiency virus type 2 group A.
  JOURNAL   J Gen Virol. 2012 Apr;93(Pt 4):889-99. Epub 2011 Dec 21.
  PUBMED    22190015
REFERENCE   2 (bases 1 to 1122)
            Show all sequences for reference 2
  AUTHORS   Silva,J.C., Goncalves,M.F. and Camacho,R.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-DEC-2011) Centro Hospitalar de Lisboa Ocidental,
	    Laboratorio de Biologia Molecular, Rua da Junqueira, 126, Lisboa
	    1349-019, Portugal
COMMENT     ##Assembly-Data-START## Assembly Method SeqScape v. 2.5 Sequencing
	    Technology Sanger dideoxy sequencing ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..1122
		     /organism="Human immunodeficiency virus 2"
		     /proviral="Human immunodeficiency virus 2"
		     /mol_type="genomic DNA"
		     /isolate="34399"
		     /host="Homo sapiens"
		     /db_xref="taxon:11709"
		     /country="Portugal"
		     /collection_date="22-Jun-1999"
		     /note="group: A"
     gene	     <1..>1122
		     /gene="pol"
     CDS	     <1..>1122
		     /gene="pol"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEX87836.1"
		     /db_xref="GI:372124853"
		     /translation="XDRGLAAPQFSLWKRPVVTAHIEGQPVEVLLDTGADDSIVAGIE
		     LGSNYSPKIVGGIGGFINTKEYKNVEIKVLNKKVRATIMTGDTPINIFGRNILTALGM
		     SLNLPVAKIEPIKVTLKPGKDGPKLRQWPLTXEKIEALKEICEKMEKEGQLEEAPPTN
		     PYNTPTFAIKKKAKTKWRMLIDFRELNKVTQDFTEIQLGIPHPAGLAKKRRITVLDVG
		     DAYFSIPLDENFRQYTAFTLPSTNNAEPGKRYIYKVLPQGWKGSPAIFQFXMRQILEP
		     FRKANQDVIIIQYMDDILIASDRTDLEHDKVVLQLKELLNGLGFSTPDEKFQKDPPYR
		     WMGYELWPTKWKLQKIQLPQKEVWTVNDIXKLVGVLNWA"
BASE COUNT	426 a	 208 c	  228 g    229 t     31 other
ORIGIN
       1 gagrcgacag aggacttgct gcacctcaat tctctctttg gaaaagacca gtagtcacag 
      61 cacacattga gggtcagcca gtagaagttc tattagacac aggggctgac gactcaatag 
     121 tagcagggat agaattagga agcaattata gyccaaaaat agtaggagga atagggggat 
     181 tcataaatac caaggaatay aaaaatgtag aaataaaagt actaaataag aaagtaagag 
     241 ccaccataat gacgggtgat accccaatta atatttttgg cagaaatatt ctgacagcct 
     301 trggcatgtc attaaaycta ccagtygcca agatagaacc aataaaggta acactgaagc 
     361 caggaaaaga tggaccaaaa ctgagacart ggcccttrac aaragaaaaa atagaagcac 
     421 taaargaaat ctgtgaraaa atggaaaarg aaggccagct agargaagca cctccaacta 
     481 atccatayaa tacccccaca tttgcaatta agaaaaaggc aaaaaccaaa tggaggatgc 
     541 taatagactt yagagaacta aacaaggtaa ctcaagattt cacagaaatt cagttaggaa 
     601 ttccacaccc agcaggatta gccaagaaaa gaagratcac tgtactagat gtrggagatg 
     661 cttacttytc cataccacta gatgaaaatt ttagacagta tactgcattc accctaccat 
     721 caacgaacaa tgcagaacca ggaaaaagat atatatataa rgtcttacca cagggatgga 
     781 arggktcacc agcaatyttt caattcayga tgaggcagat yttagaaccy ttcagaaaag 
     841 caaaccagga tgtcattatc attcagtaca tggatgatat cttaatagcy agtgacagga 
     901 cagatttrga acatgacaar gtagtcctgc arttaaagga acttctaaat ggcctaggat 
     961 tttccacccc agatgagaag ttccaaaarg accctccata ccgatggatg ggctatgaac 
    1021 tgtggccgac taaatggaag ctgcagaaaa tacagttgcc ccaaaaagaa gtatggacag 
    1081 tcaatgacat ccamaagcta gtgggtgtcc tgaattgggc ag
//
last modified: Tue May 31 10:56 2022


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