View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS JQ070703 1170 bp RNA linear VRL 01-NOV-2016
DEFINITION HIV-1 isolate 2004_1300 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JQ070703
VERSION JQ070703.2 GI:1095578054
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 732)
Show all sequences for reference 1
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennett,D.E., Puren,A. and Morris,L.
TITLE Antiretroviral drug resistance surveillance among drug-naive
HIV-1-infected individuals in Gauteng Province, South Africa in
2002 and 2004
JOURNAL Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
PUBMED 18575198
REFERENCE 2 (bases 1 to 732)
Show all sequences for reference 2
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennette,D., Puren,A. and Morris,L.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
TITLE Low Frequency of Protease Inhibitor Resistance Mutations and
Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
JOURNAL AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
PUBMED 30793914
REFERENCE 4
Show all sequences for reference 4
AUTHORS Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
TITLE Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
Analysis.
JOURNAL EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
PUBMED 31143879
FEATURES Location/Qualifiers
source 1..1170
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2004_1300"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="2004"
gene <1..>1170
/gene="pol"
CDS <1..>1170
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFE55663.2"
/translation="PQITLWQRPLVSIKVGGQIREALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
SIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKEGKITKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKNSVTVLDVGDAYFSVP
LDEGFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPD
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTD"
BASE COUNT 454 a 187 c 254 g 275 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctg gtctcaataa aagtaggggg ccagataagg
61 gaggctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt gggacctaca
241 cctgtcaaca taattggaag aaacatgttg actcagcttg gatgtacact aaattttcca
301 attagttcca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg gccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagcaatttg tgatgaaatg
421 gagaaggaag gaaaaattac aaaaattgga cctgaaaatc catataacac tccaatattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagattttag ggaactcaat
541 aaaagaactc aagacttttg ggaagttcag ttaggaatac cacacccagc agggttaaaa
601 aagaaaaatt cagtgacagt gctggatgtg ggggatgcat atttttcagt tcctttagat
661 gaaggcttca ggaaatatac tgcattcact atacctagtg taaacaatga aacaccaggg
721 attagatatc aatataatgt gctgccacaa ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcccttt agagcacaaa atccagacat agttatctat
841 caatatatgg atgacttgta tgtaggatct gatttagaaa tagggcaaca tagagcaaaa
901 atagaggagt taagggaaca tttattgaaa tggggattta ccacaccaga caagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaacttc atcctgacaa atggacagta
1021 cagcctatac agctgccaga aaaggatagc tggactgtca atgatataca aaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaggca actttgtaaa
1141 ctccttaggg gggccaaagc actaacagac
//
last modified: Tue May 31 10:56 2022