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LOCUS JQ070683 1047 bp RNA linear VRL 01-NOV-2016
DEFINITION HIV-1 isolate 2004_0309 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JQ070683
VERSION JQ070683.2 GI:1095578005
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 732)
Show all sequences for reference 1
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennett,D.E., Puren,A. and Morris,L.
TITLE Antiretroviral drug resistance surveillance among drug-naive
HIV-1-infected individuals in Gauteng Province, South Africa in
2002 and 2004
JOURNAL Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
PUBMED 18575198
REFERENCE 2 (bases 1 to 732)
Show all sequences for reference 2
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennette,D., Puren,A. and Morris,L.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
TITLE Low Frequency of Protease Inhibitor Resistance Mutations and
Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
JOURNAL AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
PUBMED 30793914
REFERENCE 4
Show all sequences for reference 4
AUTHORS Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
TITLE Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
Analysis.
JOURNAL EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
PUBMED 31143879
FEATURES Location/Qualifiers
source 1..1047
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2004_0309"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="2004"
gene <1..>1047
/gene="pol"
CDS <1..>1047
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFE55643.2"
/translation="PQITLWQRPLVTIKIGGQTKEALLDTGADDTVLEEMSLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
SIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRAKNPE
IVIYQYMDDLYVGSDLEREQHRAKIEKLREHLLRWGLTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKD"
BASE COUNT 414 a 173 c 222 g 238 t
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtcacaataa aaataggggg tcagacaaag
61 gaggctctct tagacacagg agcagatgat acagtattag aagaaatgag tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggcttta tcaaagtaag acagtatgat
181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt agggccgaca
241 cctgtcaaca taattggaag gaatatgttg actcagcttg gatgcacact aaattttcca
301 attagttcca ttgagactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgaagaaatg
421 gagaaggagg gaaaaattac aaaaattggg cctgaaaatc catataacac tccaatattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagatttttg ggaggttcaa ttaggaatac cacacccagc agggttaaaa
601 aagaaaaaat cagtgacagt actggatgtg ggagatgcat atttttcagt tcctttagat
661 gaaagcttca ggaaatatac tgcattcacc atacctagta caaacaatga gacaccaggg
721 attagatatc aatataatgt acttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caagaatctt agagcccttt agagcaaaaa atccagaaat agtcatctat
841 caatatatgg atgacttgta tgtaggatct gacttagaaa gagaacaaca tagagcaaaa
901 atagaaaagt taagagaaca tttattaagg tggggactta ccacaccaga taagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagtc
1021 cagcctatac agctgccaga aaaggac
//
last modified: Tue May 31 10:56 2022