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LOCUS	    JQ070683		    1047 bp    RNA     linear	VRL 01-NOV-2016
DEFINITION  HIV-1 isolate 2004_0309 from South Africa pol protein (pol) gene,
	    partial cds
ACCESSION   JQ070683
VERSION     JQ070683.2 GI:1095578005
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 732)
            Show all sequences for reference 1
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennett,D.E., Puren,A. and Morris,L.
  TITLE     Antiretroviral drug resistance surveillance among drug-naive
	    HIV-1-infected individuals in Gauteng Province, South Africa in
	    2002 and 2004
  JOURNAL   Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
  PUBMED    18575198
REFERENCE   2 (bases 1 to 732)
            Show all sequences for reference 2
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennette,D., Puren,A. and Morris,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
	    Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
  TITLE     Low Frequency of Protease Inhibitor Resistance Mutations and
	    Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
  JOURNAL   AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
  PUBMED    30793914
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
	    Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
	    Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
	    Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
	    Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
	    Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
	    Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
  TITLE     Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
	    Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
	    Analysis.
  JOURNAL   EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
	    10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
  PUBMED    31143879
FEATURES             Location/Qualifiers
     source	     1..1047
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2004_0309"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="2004"
     gene	     <1..>1047
		     /gene="pol"
     CDS	     <1..>1047
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFE55643.2"
		     /translation="PQITLWQRPLVTIKIGGQTKEALLDTGADDTVLEEMSLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     SIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDESFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRAKNPE
		     IVIYQYMDDLYVGSDLEREQHRAKIEKLREHLLRWGLTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKD"
BASE COUNT	414 a	 173 c	  222 g    238 t
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtcacaataa aaataggggg tcagacaaag 
      61 gaggctctct tagacacagg agcagatgat acagtattag aagaaatgag tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggcttta tcaaagtaag acagtatgat 
     181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt agggccgaca 
     241 cctgtcaaca taattggaag gaatatgttg actcagcttg gatgcacact aaattttcca 
     301 attagttcca ttgagactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgaagaaatg 
     421 gagaaggagg gaaaaattac aaaaattggg cctgaaaatc catataacac tccaatattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagatttttg ggaggttcaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaaaaaat cagtgacagt actggatgtg ggagatgcat atttttcagt tcctttagat 
     661 gaaagcttca ggaaatatac tgcattcacc atacctagta caaacaatga gacaccaggg 
     721 attagatatc aatataatgt acttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caagaatctt agagcccttt agagcaaaaa atccagaaat agtcatctat 
     841 caatatatgg atgacttgta tgtaggatct gacttagaaa gagaacaaca tagagcaaaa 
     901 atagaaaagt taagagaaca tttattaagg tggggactta ccacaccaga taagaaacat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagtc 
    1021 cagcctatac agctgccaga aaaggac
//
last modified: Tue May 31 10:56 2022


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