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LOCUS JQ070672 1194 bp RNA linear VRL 01-NOV-2016
DEFINITION HIV-1 isolate 2002_9595 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JQ070672
VERSION JQ070672.2 GI:1095577972
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 732)
Show all sequences for reference 1
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennett,D.E., Puren,A. and Morris,L.
TITLE Antiretroviral drug resistance surveillance among drug-naive
HIV-1-infected individuals in Gauteng Province, South Africa in
2002 and 2004
JOURNAL Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
PUBMED 18575198
REFERENCE 2 (bases 1 to 732)
Show all sequences for reference 2
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennette,D., Puren,A. and Morris,L.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
TITLE Low Frequency of Protease Inhibitor Resistance Mutations and
Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
JOURNAL AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
PUBMED 30793914
REFERENCE 4
Show all sequences for reference 4
AUTHORS Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
TITLE Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
Analysis.
JOURNAL EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
PUBMED 31143879
FEATURES Location/Qualifiers
source 1..1194
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2002_9595"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="2002"
gene <1..>1194
/gene="pol"
CDS <1..>1194
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFE55632.2"
/translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEISLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKSRXGMHGSKVNQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIV
PLTEEA"
BASE COUNT 458 a 203 c 261 g 270 t 2 other
ORIGIN
1 cctcagatca ctctttggca gcgacccctt gtctcaataa aagtaggggg ccagataaaa
61 gaggctctcc tagacacagg agcagatgat acagtattag aggaaataag tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatatgttg actcagcttg gatgcacact aaattttcca
301 attagcccca ttgaaactgt accagtaaag tcaaggcygg gcatgcacgg ntcaaaggtt
361 aaccaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgaagaaatg
421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagacttttg ggaagttcaa ttagggatac cacacccagc agggttaaag
601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcagt tcctttagat
661 gaagacttca ggaaatatac tgcattcacc atacctagta taaacaatga aacgccaggg
721 attagatatc aatataatgt gcttccccaa ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcccttt agagcacaaa atccagaaat agtcatctat
841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca tagagcaaaa
901 atagaggagt taagagaaca tctattaaag tggggattta ccacaccaga taagaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctgccaga aaaggatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaggca actgtgtaaa
1141 ctccttaggg gggccaaagc cttaacagac atagtaccac taactgagga agca
//
last modified: Tue May 31 10:56 2022