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LOCUS	    JQ070672		    1194 bp    RNA     linear	VRL 01-NOV-2016
DEFINITION  HIV-1 isolate 2002_9595 from South Africa pol protein (pol) gene,
	    partial cds
ACCESSION   JQ070672
VERSION     JQ070672.2 GI:1095577972
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 732)
            Show all sequences for reference 1
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennett,D.E., Puren,A. and Morris,L.
  TITLE     Antiretroviral drug resistance surveillance among drug-naive
	    HIV-1-infected individuals in Gauteng Province, South Africa in
	    2002 and 2004
  JOURNAL   Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
  PUBMED    18575198
REFERENCE   2 (bases 1 to 732)
            Show all sequences for reference 2
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennette,D., Puren,A. and Morris,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
	    Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
  TITLE     Low Frequency of Protease Inhibitor Resistance Mutations and
	    Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
  JOURNAL   AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
  PUBMED    30793914
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
	    Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
	    Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
	    Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
	    Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
	    Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
	    Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
  TITLE     Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
	    Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
	    Analysis.
  JOURNAL   EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
	    10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
  PUBMED    31143879
FEATURES             Location/Qualifiers
     source	     1..1194
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2002_9595"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="2002"
     gene	     <1..>1194
		     /gene="pol"
     CDS	     <1..>1194
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFE55632.2"
		     /translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEISLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKSRXGMHGSKVNQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAQNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIV
		     PLTEEA"
BASE COUNT	458 a	 203 c	  261 g    270 t      2 other
ORIGIN
       1 cctcagatca ctctttggca gcgacccctt gtctcaataa aagtaggggg ccagataaaa 
      61 gaggctctcc tagacacagg agcagatgat acagtattag aggaaataag tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg actcagcttg gatgcacact aaattttcca 
     301 attagcccca ttgaaactgt accagtaaag tcaaggcygg gcatgcacgg ntcaaaggtt 
     361 aaccaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgaagaaatg 
     421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagacttttg ggaagttcaa ttagggatac cacacccagc agggttaaag 
     601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcagt tcctttagat 
     661 gaagacttca ggaaatatac tgcattcacc atacctagta taaacaatga aacgccaggg 
     721 attagatatc aatataatgt gcttccccaa ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatctt agagcccttt agagcacaaa atccagaaat agtcatctat 
     841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggcaaca tagagcaaaa 
     901 atagaggagt taagagaaca tctattaaag tggggattta ccacaccaga taagaaacat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agctgccaga aaaggatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaggca actgtgtaaa 
    1141 ctccttaggg gggccaaagc cttaacagac atagtaccac taactgagga agca
//
last modified: Tue May 31 10:56 2022


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