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LOCUS	    JQ070640		    1194 bp    RNA     linear	VRL 01-NOV-2016
DEFINITION  HIV-1 isolate 2002_7832 from South Africa pol protein (pol) gene,
	    partial cds
ACCESSION   JQ070640
VERSION     JQ070640.2 GI:1095577873
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 732)
            Show all sequences for reference 1
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennett,D.E., Puren,A. and Morris,L.
  TITLE     Antiretroviral drug resistance surveillance among drug-naive
	    HIV-1-infected individuals in Gauteng Province, South Africa in
	    2002 and 2004
  JOURNAL   Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
  PUBMED    18575198
REFERENCE   2 (bases 1 to 732)
            Show all sequences for reference 2
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennette,D., Puren,A. and Morris,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
	    Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
  TITLE     Low Frequency of Protease Inhibitor Resistance Mutations and
	    Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
  JOURNAL   AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
  PUBMED    30793914
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
	    Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
	    Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
	    Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
	    Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
	    Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
	    Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
  TITLE     Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
	    Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
	    Analysis.
  JOURNAL   EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
	    10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
  PUBMED    31143879
FEATURES             Location/Qualifiers
     source	     1..1194
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2002_7832"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="2002"
     gene	     <1..>1194
		     /gene="pol"
     CDS	     <1..>1194
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFE55600.2"
		     /translation="PQITLWQRPLVSIKIGGQIKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE
		     IVIYQYMDDLYVGSDLEIGLHRARIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTDIV
		     PLTEEA"
BASE COUNT	469 a	 198 c	  255 g    271 t      1 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtctcaataa aaataggggg tcaaataaag 
      61 gaggctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggagggttta tcaaagtaag acaatatgat 
     181 caaatactaa tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaacatgttg actcagcttg gatgcacatt aaattttcct 
     301 attagtccca ttgaaactgt accagtaaaa ctaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgaagaaatg 
     421 gagaaggaag gaaaaattac aaaaattggg cctgagaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagacttcag ggaactcaat 
     541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cacatccagc agggttaaaa 
     601 aagaaaaaat cagtracagt actggatgtg ggggatgcat atttttcggt tcctttagat 
     661 gaaggcttca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg 
     721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcccttt agagcaaaaa atccagaaat agtcatctat 
     841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggctaca tagagcaaga 
     901 atagaggagt taagagagca tctattaagg tggggattta ccacaccaga caagaaacat 
     961 cagaaagaac ctccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agctgccaga aaaagatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac gcagggatca aagtaaggca actttgtaaa 
    1141 ctccttaggg gggccaaagc actaacagac atagtaccac taaccgaaga agca
//
last modified: Tue May 31 10:56 2022


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