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LOCUS JQ070640 1194 bp RNA linear VRL 01-NOV-2016
DEFINITION HIV-1 isolate 2002_7832 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JQ070640
VERSION JQ070640.2 GI:1095577873
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 732)
Show all sequences for reference 1
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennett,D.E., Puren,A. and Morris,L.
TITLE Antiretroviral drug resistance surveillance among drug-naive
HIV-1-infected individuals in Gauteng Province, South Africa in
2002 and 2004
JOURNAL Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
PUBMED 18575198
REFERENCE 2 (bases 1 to 732)
Show all sequences for reference 2
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennette,D., Puren,A. and Morris,L.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
TITLE Low Frequency of Protease Inhibitor Resistance Mutations and
Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
JOURNAL AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
PUBMED 30793914
REFERENCE 4
Show all sequences for reference 4
AUTHORS Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
TITLE Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
Analysis.
JOURNAL EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
PUBMED 31143879
FEATURES Location/Qualifiers
source 1..1194
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2002_7832"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="2002"
gene <1..>1194
/gene="pol"
CDS <1..>1194
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFE55600.2"
/translation="PQITLWQRPLVSIKIGGQIKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE
IVIYQYMDDLYVGSDLEIGLHRARIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTDIV
PLTEEA"
BASE COUNT 469 a 198 c 255 g 271 t 1 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtctcaataa aaataggggg tcaaataaag
61 gaggctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggagggttta tcaaagtaag acaatatgat
181 caaatactaa tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaacatgttg actcagcttg gatgcacatt aaattttcct
301 attagtccca ttgaaactgt accagtaaaa ctaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgaagaaatg
421 gagaaggaag gaaaaattac aaaaattggg cctgagaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagacttcag ggaactcaat
541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cacatccagc agggttaaaa
601 aagaaaaaat cagtracagt actggatgtg ggggatgcat atttttcggt tcctttagat
661 gaaggcttca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg
721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcccttt agagcaaaaa atccagaaat agtcatctat
841 caatatatgg atgacttgta tgtaggatct gacttagaaa tagggctaca tagagcaaga
901 atagaggagt taagagagca tctattaagg tggggattta ccacaccaga caagaaacat
961 cagaaagaac ctccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctgccaga aaaagatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac gcagggatca aagtaaggca actttgtaaa
1141 ctccttaggg gggccaaagc actaacagac atagtaccac taaccgaaga agca
//
last modified: Tue May 31 10:56 2022