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LOCUS	    JQ070637		    1194 bp    RNA     linear	VRL 01-NOV-2016
DEFINITION  HIV-1 isolate 2002_7737 from South Africa pol protein (pol) gene,
	    partial cds
ACCESSION   JQ070637
VERSION     JQ070637.2 GI:1095577863
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 732)
            Show all sequences for reference 1
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennett,D.E., Puren,A. and Morris,L.
  TITLE     Antiretroviral drug resistance surveillance among drug-naive
	    HIV-1-infected individuals in Gauteng Province, South Africa in
	    2002 and 2004
  JOURNAL   Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
  PUBMED    18575198
REFERENCE   2 (bases 1 to 732)
            Show all sequences for reference 2
  AUTHORS   Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
	    Bennette,D., Puren,A. and Morris,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
	    Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
  TITLE     Low Frequency of Protease Inhibitor Resistance Mutations and
	    Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
  JOURNAL   AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
  PUBMED    30793914
REFERENCE   4
            Show all sequences for reference 4
  AUTHORS   Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
	    Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
	    Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
	    Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
	    Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
	    Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
	    Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
  TITLE     Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
	    Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
	    Analysis.
  JOURNAL   EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
	    10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
  PUBMED    31143879
FEATURES             Location/Qualifiers
     source	     1..1194
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="2002_7737"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="2002"
     gene	     <1..>1194
		     /gene="pol"
     CDS	     <1..>1194
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFE55597.2"
		     /translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEISLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEBFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRAQNPE
		     IVIYQYMDDLYXGSDLEIGQHRAKIEELREHLLKWGLTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIQVRHLCKLLRGAKALTXII
		     PLTEEA"
BASE COUNT	462 a	 201 c	  254 g    264 t     13 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtctcaataa aagtaggggg ccagataaaa 
      61 gaggctctct tagacacagg rgcagaygat acagtattag aagaaataag tttaccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tyaaagtaag acagtatgat 
     181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt gggacctaca 
     241 cctgtcaaca taattggaag gaatatgttg actcagcttg gatgtacact aaattttcca 
     301 atcagtccca ttgaaacrgt accagtaaaa ttaaagccag gaatggatgg gccaaaggtt 
     361 aaacaatggc cattgacaga agaraaaata aaagcattaa cagcaatttg tgaagagatg 
     421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttyag ggaactyaat 
     541 aaaagaactc aagacttttg ggaagttcaa ytaggaatac cacacccagc agggttaaaa 
     601 aagaaaaaat cagtgacagt actrgaygtg ggggatgcat acttttcagt tcctttagat 
     661 gaaracttca ggaaatatac tgcattcacc atacctagta caaacaatga aacaccaggg 
     721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 tgtagcatga caaaaatctt agagcccttt agggcacaaa atccagaaat agtcatctat 
     841 caatatatgg atgacttgta trtaggatct gacttagaaa ttgggcagca tagagcaaaa 
     901 atagaggagt taagagaaca tctattaaag tggggactta ccacaccaga caagaaacat 
     961 cagaaagaac ccccattcct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agctaccaga aaaggagagc tggactgtca atgatataca aaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccagggattc aagtaaggca cctctgtaaa 
    1141 ctccttaggg gggccaaagc actaacagam ataataccac tgactgaaga agca
//
last modified: Tue May 31 10:56 2022


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