View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS JQ070637 1194 bp RNA linear VRL 01-NOV-2016
DEFINITION HIV-1 isolate 2002_7737 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JQ070637
VERSION JQ070637.2 GI:1095577863
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 732)
Show all sequences for reference 1
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennett,D.E., Puren,A. and Morris,L.
TITLE Antiretroviral drug resistance surveillance among drug-naive
HIV-1-infected individuals in Gauteng Province, South Africa in
2002 and 2004
JOURNAL Antivir. Ther. (Lond.) 13 SUPPL 2, 101-107 (2008)
PUBMED 18575198
REFERENCE 2 (bases 1 to 732)
Show all sequences for reference 2
AUTHORS Pillay,V., Ledwaba,J., Hunt,G., Rakgotho,M., Singh,B., Makubalo,L.,
Bennette,D., Puren,A. and Morris,L.
TITLE Direct Submission
JOURNAL Submitted (24-NOV-2011) Aids Virus Research Unit, NICD, 1
Modderfontein Road, Sandringham, Gauteng 2131, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
TITLE Low Frequency of Protease Inhibitor Resistance Mutations and
Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
JOURNAL AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
PUBMED 30793914
REFERENCE 4
Show all sequences for reference 4
AUTHORS Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
TITLE Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
Analysis.
JOURNAL EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
PUBMED 31143879
FEATURES Location/Qualifiers
source 1..1194
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="2002_7737"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="2002"
gene <1..>1194
/gene="pol"
CDS <1..>1194
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFE55597.2"
/translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEISLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEBFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRAQNPE
IVIYQYMDDLYXGSDLEIGQHRAKIEELREHLLKWGLTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKESWTVNDIQKLVGKLNWASQIYPGIQVRHLCKLLRGAKALTXII
PLTEEA"
BASE COUNT 462 a 201 c 254 g 264 t 13 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtctcaataa aagtaggggg ccagataaaa
61 gaggctctct tagacacagg rgcagaygat acagtattag aagaaataag tttaccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tyaaagtaag acagtatgat
181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt gggacctaca
241 cctgtcaaca taattggaag gaatatgttg actcagcttg gatgtacact aaattttcca
301 atcagtccca ttgaaacrgt accagtaaaa ttaaagccag gaatggatgg gccaaaggtt
361 aaacaatggc cattgacaga agaraaaata aaagcattaa cagcaatttg tgaagagatg
421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttyag ggaactyaat
541 aaaagaactc aagacttttg ggaagttcaa ytaggaatac cacacccagc agggttaaaa
601 aagaaaaaat cagtgacagt actrgaygtg ggggatgcat acttttcagt tcctttagat
661 gaaracttca ggaaatatac tgcattcacc atacctagta caaacaatga aacaccaggg
721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 tgtagcatga caaaaatctt agagcccttt agggcacaaa atccagaaat agtcatctat
841 caatatatgg atgacttgta trtaggatct gacttagaaa ttgggcagca tagagcaaaa
901 atagaggagt taagagaaca tctattaaag tggggactta ccacaccaga caagaaacat
961 cagaaagaac ccccattcct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctaccaga aaaggagagc tggactgtca atgatataca aaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccagggattc aagtaaggca cctctgtaaa
1141 ctccttaggg gggccaaagc actaacagam ataataccac tgactgaaga agca
//
last modified: Tue May 31 10:56 2022