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LOCUS	    JN944906		     843 bp    RNA     linear	VRL 01-FEB-2012
DEFINITION  HIV-1 isolate CH58_RU5_con from USA gag protein (gag) gene, partial
	    cds
ACCESSION   JN944906
VERSION     JN944906.1 GI:357395148
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 843)
            Show all sequences for reference 1
  AUTHORS   Ochsenbauer,C., Edmonds,T.G., Ding,H., Keele,B.F., Decker,J.,
	    Salazar,M.G., Salazar-Gonzalez,J.F., Shattock,R., Haynes,B.F.,
	    Shaw,G.M., Hahn,B.H. and Kappes,J.C.
  TITLE     Generation of Transmitted/Founder HIV-1 Infectious Molecular Clones
	    and Characterization of Their Replication Capacity in CD4 T
	    Lymphocytes and Monocyte-Derived Macrophages.
  JOURNAL   J. Virol.. 86(5); 2715-28 (2012)
  PUBMED    22190722
REFERENCE   2 (bases 1 to 843)
            Show all sequences for reference 2
  AUTHORS   Ochsenbauer,C., Edmonds,T., Ding,H., Keele,B., Decker,J.,
	    Salazar,M., Salazar-Gonzales,J., Shattock,R., Haynes,B., Shaw,G.,
	    Hahn,B. and Kappes,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2011) Medicine, University of Alabama at
	    Birmingham, 701 19th Street S LHRB619, Birmingham, AL 35294, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV-1 Database at Los Alamos (hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient code 700010058 Patient Cohort
	    CHAVI001 Patient sex M Risk factor MSM Viral load 394649 Fiebig
	    Stage 3 Sample City North Carolina Sample tissue plasma Culture
	    method uncultured Amplification Strategy single genome
	    amplification ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..843
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CH58_RU5_con"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="31-Aug-2006"
		     /note="subtype: B"
     gene	     313..>843
		     /gene="gag"
     CDS	     313..>843
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AET76061.1"
		     /db_xref="GI:357395149"
		     /translation="MGARASVISGAELDRWEKIRLRPGGSKKYKLKHIVWASRELERF
		     AVNPGLLETSEGCRQILVQLQPSLQTGSEELKSLYNTVVTLYCVHRRIDVKDTKEALE
		     KVEEEQNKSKKNAQQVQQAAAGTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVK
		     VIEEKAFSPEVIPMFSA"
BASE COUNT	280 a	 164 c	  227 g    172 t
ORIGIN
       1 tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg 
      61 ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc 
     121 ctcagaccct tttagtcagt gtggaaaatc tctagcagtg gcgcccgaac agggacctga 
     181 aagcgaaagt agaaccggag gagctctctc gacgcaggac tcggcttgct gaagcgcgca 
     241 cggcaagagg cgaggggcgg cgactggtga gtacgccaaa atttttgact agcggaggct 
     301 agaaggagag agatgggtgc gagagcgtcg gtaataagtg gtgcggaatt agatagatgg 
     361 gaaaaaattc ggttaaggcc aggaggaagt aaaaaatata aattaaaaca tatagtatgg 
     421 gcaagcaggg agttagaacg attcgcagtc aatcctggcc tattagaaac atcagaaggc 
     481 tgtagacaaa tactggtaca gctacaacca tctcttcaga caggatcaga agaacttaaa 
     541 tcattatata atacagtagt aaccctctat tgtgtgcatc gaaggataga tgtaaaagac 
     601 accaaagaag ctttagaaaa ggtagaggaa gagcaaaaca aaagtaagaa aaatgcacag 
     661 caagtacagc aagcagcagc tggcacagga aacagcagtc aggtcagcca gaattaccct 
     721 atagtgcaga accttcaggg gcaaatggta catcaggcca tatcgcctag aactttaaat 
     781 gcatgggtaa aagtaataga agagaaggct ttcagcccag aagtgatacc catgttttca 
     841 gca
//
last modified: Tue May 31 10:56 2022


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