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LOCUS JN944906 843 bp RNA linear VRL 01-FEB-2012
DEFINITION HIV-1 isolate CH58_RU5_con from USA gag protein (gag) gene, partial
cds
ACCESSION JN944906
VERSION JN944906.1 GI:357395148
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 843)
Show all sequences for reference 1
AUTHORS Ochsenbauer,C., Edmonds,T.G., Ding,H., Keele,B.F., Decker,J.,
Salazar,M.G., Salazar-Gonzalez,J.F., Shattock,R., Haynes,B.F.,
Shaw,G.M., Hahn,B.H. and Kappes,J.C.
TITLE Generation of Transmitted/Founder HIV-1 Infectious Molecular Clones
and Characterization of Their Replication Capacity in CD4 T
Lymphocytes and Monocyte-Derived Macrophages.
JOURNAL J. Virol.. 86(5); 2715-28 (2012)
PUBMED 22190722
REFERENCE 2 (bases 1 to 843)
Show all sequences for reference 2
AUTHORS Ochsenbauer,C., Edmonds,T., Ding,H., Keele,B., Decker,J.,
Salazar,M., Salazar-Gonzales,J., Shattock,R., Haynes,B., Shaw,G.,
Hahn,B. and Kappes,J.
TITLE Direct Submission
JOURNAL Submitted (25-OCT-2011) Medicine, University of Alabama at
Birmingham, 701 19th Street S LHRB619, Birmingham, AL 35294, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV-1 Database at Los Alamos (hiv.lanl.gov).;
##HIVDataBaseData-START## Patient code 700010058 Patient Cohort
CHAVI001 Patient sex M Risk factor MSM Viral load 394649 Fiebig
Stage 3 Sample City North Carolina Sample tissue plasma Culture
method uncultured Amplification Strategy single genome
amplification ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..843
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CH58_RU5_con"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="31-Aug-2006"
/note="subtype: B"
gene 313..>843
/gene="gag"
CDS 313..>843
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="AET76061.1"
/db_xref="GI:357395149"
/translation="MGARASVISGAELDRWEKIRLRPGGSKKYKLKHIVWASRELERF
AVNPGLLETSEGCRQILVQLQPSLQTGSEELKSLYNTVVTLYCVHRRIDVKDTKEALE
KVEEEQNKSKKNAQQVQQAAAGTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVK
VIEEKAFSPEVIPMFSA"
BASE COUNT 280 a 164 c 227 g 172 t
ORIGIN
1 tgagcctggg agctctctgg ctagctaggg aacccactgc ttaagcctca ataaagcttg
61 ccttgagtgc ttcaagtagt gtgtgcccgt ctgttgtgtg actctggtaa ctagagatcc
121 ctcagaccct tttagtcagt gtggaaaatc tctagcagtg gcgcccgaac agggacctga
181 aagcgaaagt agaaccggag gagctctctc gacgcaggac tcggcttgct gaagcgcgca
241 cggcaagagg cgaggggcgg cgactggtga gtacgccaaa atttttgact agcggaggct
301 agaaggagag agatgggtgc gagagcgtcg gtaataagtg gtgcggaatt agatagatgg
361 gaaaaaattc ggttaaggcc aggaggaagt aaaaaatata aattaaaaca tatagtatgg
421 gcaagcaggg agttagaacg attcgcagtc aatcctggcc tattagaaac atcagaaggc
481 tgtagacaaa tactggtaca gctacaacca tctcttcaga caggatcaga agaacttaaa
541 tcattatata atacagtagt aaccctctat tgtgtgcatc gaaggataga tgtaaaagac
601 accaaagaag ctttagaaaa ggtagaggaa gagcaaaaca aaagtaagaa aaatgcacag
661 caagtacagc aagcagcagc tggcacagga aacagcagtc aggtcagcca gaattaccct
721 atagtgcaga accttcaggg gcaaatggta catcaggcca tatcgcctag aactttaaat
781 gcatgggtaa aagtaataga agagaaggct ttcagcccag aagtgatacc catgttttca
841 gca
//
last modified: Tue May 31 10:56 2022