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LOCUS JN786748 2707 bp DNA linear VRL 30-OCT-2011
DEFINITION HIV-1 clone 7766CB20-15-33.EPI from USA envelope glycoprotein gene,
complete cds
ACCESSION JN786748
VERSION JN786748.1 GI:353741525
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2707)
Show all sequences for reference 1
AUTHORS Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
Simmonds,P. and Clapham,P.R.
TITLE Independent evolution of macrophage-tropism and increased charge
between HIV-1 R5 envelopes present in brain and immune tissue.
JOURNAL Retrovirology. 2012 Mar 15;9:20. doi: 10.1186/1742-4690-9-20.
PUBMED 22420378
REFERENCE 2 (bases 1 to 2707)
Show all sequences for reference 2
AUTHORS Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
Simmonds,P. and Clapham,P.R.
TITLE Direct Submission
JOURNAL Submitted (23-SEP-2011) Program in Molecular Medicine and
Department of Medical School, University of Massachusetts Medical
School, 373 Plantation Street Biotech II Suite 315, Worcester, MA
01605, USA
FEATURES Location/Qualifiers
source 1..2707
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="patient 7766 cerebellum"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="7766CB20-15-33.EPI"
/country="USA"
/collection_date="1999"
/note="subtype: B"
CDS 1..2583
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AER22469.1"
/db_xref="GI:353741526"
/translation="MRVKGIRKSYQHLWKWGTMLLGILMICNATKELWVTVYYGVPVW
KEANTTLFCASDAKAYATEVHNVWATHACVPTDPSPQEVVLENVTENFNMWKNGMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTNKLENTTYVNNSGWEEGEIKNCSFNVTTN
IRDKIQKEYALFYKLDVVPIEDVNKTASYTSYRLISCNTSVIRQACPKVSFEPIPIHY
CAPAGFAILKCNDTRFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSE
NFTNNAKNIIVQLKEAVEINCTRPNNNTRKGIHIGPGSAFYATGDIIGDIRQAHCNIS
GEKWNNTLKQIARKLREQYKNATIDFTHSPGGDPEIVMHSFNCGGEFFYCNTTKLFNS
TWDVNSTMNEGSNHTNTNETITLPCRIKQIINMWQGVGKAMYAPPISGLIRCTSNITG
LILTRDGGNNTGTGNNTRIEIFRPGGGDMRDNWRSELYRYKVVKIEPLGVAPTEAKRR
VVQREKRAVGFGALFLGFLSAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQ
QHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTAVPWNASWSNKSLD
MIWDNMTWMEWEREIDNYTDLIYSLLEESQIQQEKNEQELLALDKWASLWNWFNITNW
LWYIKLFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRLPAQRGPGRPEGIEGE
GGERDRDTSGRLVDGFLAIIWVDLRSLFLFSYHRLRDLLLIVTRIVELLGRRGWEALK
YWWNLLQYWSQEIKTSAVSLLNATSIAVAEGTDRIIEIVQRAFRAILHIPRRIRQGAE
RILV"
BASE COUNT 926 a 463 c 674 g 644 t
ORIGIN
1 atgagagtga aggggatcag gaagagttat cagcacttgt ggaaatgggg cacgatgctc
61 cttgggatat tgatgatctg taatgctaca aaggaattgt gggtcacagt ctattatggg
121 gtgcctgtgt ggaaagaagc aaacaccact ctattttgtg cttcggatgc caaagcatat
181 gctacagagg tacataatgt ttgggccacg catgcctgtg tacccacaga ccccagccca
241 caagaagtag tattggaaaa tgtgacagaa aattttaaca tgtggaaaaa tggcatggta
301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtgaaa
361 ttaaccccac tctgtgttac tttaaattgc actaacaaat tggagaatac tacttatgtc
421 aataatagtg gctgggagga aggagaaata aaaaactgct ctttcaatgt caccacaaac
481 ataagagata agatacagaa agaatatgca cttttttata aactagatgt agtaccaata
541 gaggatgtaa ataaaactgc aagttatacc agctataggt tgataagttg taacacctca
601 gtcattagac aagcctgtcc aaaggtatcc tttgagccaa ttcccataca ttattgtgcc
661 ccggctggtt ttgcgattct aaagtgtaat gatacaaggt tcaatggaac aggaccatgt
721 aaaaatgtca gcacagtaca atgtacacat ggaattaggc cagtagtatc aacccaattg
781 ctgttaaatg gcagtctagc agaggaagag gtagtaatta gatctgaaaa tttcacaaac
841 aatgctaaaa acataatagt acagctgaaa gaagctgtag aaattaattg tacaaggccc
901 aacaacaata caagaaaagg tatacatata ggaccaggga gtgcctttta tgcaacagga
961 gatataatag gagacataag acaagcacat tgtaacatta gtggagaaaa atggaataac
1021 actttaaaac agatagctcg aaaattaaga gaacaatata agaatgcaac aatagacttt
1081 actcactccc caggagggga cccagagatt gtaatgcaca gttttaattg tggaggggaa
1141 tttttctact gtaatacaac aaaactgttt aatagtactt gggatgttaa tagtactatg
1201 aatgaagggt caaatcacac aaacacaaat gaaactatca cactcccatg cagaataaaa
1261 caaattataa acatgtggca gggagtagga aaagcaatgt atgcccctcc catcagtgga
1321 ctaattagat gtacatcaaa tattacaggg ctgatattaa caagagatgg tggtaataat
1381 accgggaccg ggaacaatac caggatcgag atcttcagac ctggaggagg agatatgagg
1441 gacaattgga gaagtgaatt atacagatat aaagtagtaa aaattgaacc attaggagta
1501 gcccccaccg aggcaaagag aagagtggtg cagagagaaa aaagagcagt gggattcgga
1561 gctttgttcc ttgggttctt gagtgcagca ggaagcacta tgggcgcagc gtcggtgacg
1621 ctgacggtac aggccagaca attattgtct ggtatagtgc aacagcagaa caatctgctg
1681 agggctattg aggcgcaaca acatctgttg caactcacag tctggggcat caagcagctc
1741 caggcaagag tcctggctgt ggaaagatac ctaagggatc aacagctcct gggaatttgg
1801 ggttgctctg gaaaactcat ctgcaccact gctgtgcctt ggaatgctag ttggagtaat
1861 aaatctctgg atatgatttg ggataacatg acctggatgg agtgggaaag agaaattgac
1921 aattacacag acctaatata ctccttactt gaagaatcgc agatccaaca agaaaagaat
1981 gaacaagaat tactagcatt agataaatgg gcaagtttgt ggaattggtt taacataaca
2041 aattggctgt ggtatataaa attgttcata atgatagtag gaggcttgat aggtttaaga
2101 atagttttta ctgtactttc tatagtgaat agagttaggc agggatactc accattgtcg
2161 tttcagaccc gcctcccagc ccagagggga cccggcaggc ccgaaggaat cgaaggagaa
2221 ggtggagaga gagacagaga cacatccggg agattagtgg atggattctt agcaattatc
2281 tgggtcgatc tgcggagcct gttcctcttc agctaccacc gcttgagaga cttactcttg
2341 attgtaacga ggattgtgga acttctggga cgcagggggt gggaagccct caaatattgg
2401 tggaatctcc tgcagtattg gagtcaggag ataaagacta gtgctgttag cttgcttaat
2461 gccacttcca tagcagtagc tgaggggaca gataggatta tagaaatagt acaaagggct
2521 tttagagcta tcctccacat acctagaaga ataagacaag gcgcggaaag aattttggta
2581 taaaatgggt ggcaagtggt caaaaagtaa tgggtggtct agagtaaggg aaagaatgag
2641 aagaactgag ccagcagcag agccagcagc agaaggggtg ggagcagtat ctcgagacgg
2701 atccagc
//
last modified: Tue May 31 10:56 2022