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LOCUS	    JN786748		    2707 bp    DNA     linear	VRL 30-OCT-2011
DEFINITION  HIV-1 clone 7766CB20-15-33.EPI from USA envelope glycoprotein gene,
	    complete cds
ACCESSION   JN786748
VERSION     JN786748.1 GI:353741525
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2707)
            Show all sequences for reference 1
  AUTHORS   Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
	    Simmonds,P. and Clapham,P.R.
  TITLE     Independent evolution of macrophage-tropism and increased charge
	    between HIV-1 R5 envelopes present in brain and immune tissue.
  JOURNAL   Retrovirology. 2012 Mar 15;9:20. doi: 10.1186/1742-4690-9-20.
  PUBMED    22420378
REFERENCE   2 (bases 1 to 2707)
            Show all sequences for reference 2
  AUTHORS   Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
	    Simmonds,P. and Clapham,P.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-SEP-2011) Program in Molecular Medicine and
	    Department of Medical School, University of Massachusetts Medical
	    School, 373 Plantation Street Biotech II Suite 315, Worcester, MA
	    01605, USA
FEATURES             Location/Qualifiers
     source	     1..2707
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolation_source="patient 7766 cerebellum"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="7766CB20-15-33.EPI"
		     /country="USA"
		     /collection_date="1999"
		     /note="subtype: B"
     CDS	     1..2583
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AER22469.1"
		     /db_xref="GI:353741526"
		     /translation="MRVKGIRKSYQHLWKWGTMLLGILMICNATKELWVTVYYGVPVW
		     KEANTTLFCASDAKAYATEVHNVWATHACVPTDPSPQEVVLENVTENFNMWKNGMVEQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCTNKLENTTYVNNSGWEEGEIKNCSFNVTTN
		     IRDKIQKEYALFYKLDVVPIEDVNKTASYTSYRLISCNTSVIRQACPKVSFEPIPIHY
		     CAPAGFAILKCNDTRFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSE
		     NFTNNAKNIIVQLKEAVEINCTRPNNNTRKGIHIGPGSAFYATGDIIGDIRQAHCNIS
		     GEKWNNTLKQIARKLREQYKNATIDFTHSPGGDPEIVMHSFNCGGEFFYCNTTKLFNS
		     TWDVNSTMNEGSNHTNTNETITLPCRIKQIINMWQGVGKAMYAPPISGLIRCTSNITG
		     LILTRDGGNNTGTGNNTRIEIFRPGGGDMRDNWRSELYRYKVVKIEPLGVAPTEAKRR
		     VVQREKRAVGFGALFLGFLSAAGSTMGAASVTLTVQARQLLSGIVQQQNNLLRAIEAQ
		     QHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTAVPWNASWSNKSLD
		     MIWDNMTWMEWEREIDNYTDLIYSLLEESQIQQEKNEQELLALDKWASLWNWFNITNW
		     LWYIKLFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRLPAQRGPGRPEGIEGE
		     GGERDRDTSGRLVDGFLAIIWVDLRSLFLFSYHRLRDLLLIVTRIVELLGRRGWEALK
		     YWWNLLQYWSQEIKTSAVSLLNATSIAVAEGTDRIIEIVQRAFRAILHIPRRIRQGAE
		     RILV"
BASE COUNT	926 a	 463 c	  674 g    644 t
ORIGIN
       1 atgagagtga aggggatcag gaagagttat cagcacttgt ggaaatgggg cacgatgctc 
      61 cttgggatat tgatgatctg taatgctaca aaggaattgt gggtcacagt ctattatggg 
     121 gtgcctgtgt ggaaagaagc aaacaccact ctattttgtg cttcggatgc caaagcatat 
     181 gctacagagg tacataatgt ttgggccacg catgcctgtg tacccacaga ccccagccca 
     241 caagaagtag tattggaaaa tgtgacagaa aattttaaca tgtggaaaaa tggcatggta 
     301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtgaaa 
     361 ttaaccccac tctgtgttac tttaaattgc actaacaaat tggagaatac tacttatgtc 
     421 aataatagtg gctgggagga aggagaaata aaaaactgct ctttcaatgt caccacaaac 
     481 ataagagata agatacagaa agaatatgca cttttttata aactagatgt agtaccaata 
     541 gaggatgtaa ataaaactgc aagttatacc agctataggt tgataagttg taacacctca 
     601 gtcattagac aagcctgtcc aaaggtatcc tttgagccaa ttcccataca ttattgtgcc 
     661 ccggctggtt ttgcgattct aaagtgtaat gatacaaggt tcaatggaac aggaccatgt 
     721 aaaaatgtca gcacagtaca atgtacacat ggaattaggc cagtagtatc aacccaattg 
     781 ctgttaaatg gcagtctagc agaggaagag gtagtaatta gatctgaaaa tttcacaaac 
     841 aatgctaaaa acataatagt acagctgaaa gaagctgtag aaattaattg tacaaggccc 
     901 aacaacaata caagaaaagg tatacatata ggaccaggga gtgcctttta tgcaacagga 
     961 gatataatag gagacataag acaagcacat tgtaacatta gtggagaaaa atggaataac 
    1021 actttaaaac agatagctcg aaaattaaga gaacaatata agaatgcaac aatagacttt 
    1081 actcactccc caggagggga cccagagatt gtaatgcaca gttttaattg tggaggggaa 
    1141 tttttctact gtaatacaac aaaactgttt aatagtactt gggatgttaa tagtactatg 
    1201 aatgaagggt caaatcacac aaacacaaat gaaactatca cactcccatg cagaataaaa 
    1261 caaattataa acatgtggca gggagtagga aaagcaatgt atgcccctcc catcagtgga 
    1321 ctaattagat gtacatcaaa tattacaggg ctgatattaa caagagatgg tggtaataat 
    1381 accgggaccg ggaacaatac caggatcgag atcttcagac ctggaggagg agatatgagg 
    1441 gacaattgga gaagtgaatt atacagatat aaagtagtaa aaattgaacc attaggagta 
    1501 gcccccaccg aggcaaagag aagagtggtg cagagagaaa aaagagcagt gggattcgga 
    1561 gctttgttcc ttgggttctt gagtgcagca ggaagcacta tgggcgcagc gtcggtgacg 
    1621 ctgacggtac aggccagaca attattgtct ggtatagtgc aacagcagaa caatctgctg 
    1681 agggctattg aggcgcaaca acatctgttg caactcacag tctggggcat caagcagctc 
    1741 caggcaagag tcctggctgt ggaaagatac ctaagggatc aacagctcct gggaatttgg 
    1801 ggttgctctg gaaaactcat ctgcaccact gctgtgcctt ggaatgctag ttggagtaat 
    1861 aaatctctgg atatgatttg ggataacatg acctggatgg agtgggaaag agaaattgac 
    1921 aattacacag acctaatata ctccttactt gaagaatcgc agatccaaca agaaaagaat 
    1981 gaacaagaat tactagcatt agataaatgg gcaagtttgt ggaattggtt taacataaca 
    2041 aattggctgt ggtatataaa attgttcata atgatagtag gaggcttgat aggtttaaga 
    2101 atagttttta ctgtactttc tatagtgaat agagttaggc agggatactc accattgtcg 
    2161 tttcagaccc gcctcccagc ccagagggga cccggcaggc ccgaaggaat cgaaggagaa 
    2221 ggtggagaga gagacagaga cacatccggg agattagtgg atggattctt agcaattatc 
    2281 tgggtcgatc tgcggagcct gttcctcttc agctaccacc gcttgagaga cttactcttg 
    2341 attgtaacga ggattgtgga acttctggga cgcagggggt gggaagccct caaatattgg 
    2401 tggaatctcc tgcagtattg gagtcaggag ataaagacta gtgctgttag cttgcttaat 
    2461 gccacttcca tagcagtagc tgaggggaca gataggatta tagaaatagt acaaagggct 
    2521 tttagagcta tcctccacat acctagaaga ataagacaag gcgcggaaag aattttggta 
    2581 taaaatgggt ggcaagtggt caaaaagtaa tgggtggtct agagtaaggg aaagaatgag 
    2641 aagaactgag ccagcagcag agccagcagc agaaggggtg ggagcagtat ctcgagacgg 
    2701 atccagc
//
last modified: Tue May 31 10:56 2022


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