View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS JN786714 2680 bp DNA linear VRL 30-OCT-2011
DEFINITION HIV-1 clone 6568SP6-10-1.PRO from USA envelope glycoprotein gene,
complete cds
ACCESSION JN786714
VERSION JN786714.1 GI:353741470
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2680)
Show all sequences for reference 1
AUTHORS Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
Simmonds,P. and Clapham,P.R.
TITLE Independent evolution of macrophage-tropism and increased charge
between HIV-1 R5 envelopes present in brain and immune tissue.
JOURNAL Retrovirology. 2012 Mar 15;9:20. doi: 10.1186/1742-4690-9-20.
PUBMED 22420378
REFERENCE 2 (bases 1 to 2680)
Show all sequences for reference 2
AUTHORS Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
Simmonds,P. and Clapham,P.R.
TITLE Direct Submission
JOURNAL Submitted (23-SEP-2011) Program in Molecular Medicine and
Department of Medical School, University of Massachusetts Medical
School, 373 Plantation Street Biotech II Suite 315, Worcester, MA
01605, USA
FEATURES Location/Qualifiers
source 1..2680
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="patient 6568 spleen"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="6568SP6-10-1.PRO"
/country="USA"
/collection_date="2001"
/note="subtype: B"
CDS 1..2562
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AER22448.1"
/db_xref="GI:353741471"
/translation="MRVKGIRKNYQHWWKGGILLLGMLMICRAEKDKWVTVYYGVPVW
KEANTTLFCASDAKAYSIEAHNVWATHACVPTDPNPQEIVLGNVTETFNVWKNNMVDQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTNVKSNGTSPPTTSSSWKTVKEGEIKNCSF
NITTDMKEKVEKKHAIFYDLDVMPLDNSSNSYRLISCNTSRITQACPKISFEPIPIHY
CAPAGFAILKCNDKKFNKTGHCQNVSTVQCTHGIKPVVSTQLLLNGSLAEQDVEIRSE
NFTNNAKTIIVQLKDPVEISCARPNNNTRDSIHMGPGKAFYTTGDIIGDIRQAHCNIS
EAKWNKTLEQVVGKLREQFGNKIIKFNQSSGGDPEITMHSFNCRGEFFYCNTTKLFNS
VWNATERNGTQNVTDKTITLPCRIKQIINMWQQVGKAMYAPPISGLLNCSSNITGLLI
TRDGGNNGNNDTETFRPGGGDMRDNWRSELYKYKVVRIEPIGIAPTEAKRRVVQREKR
AVGIGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLT
VWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTAVPWNNSWSDKNLSAIWETMT
WMQWEKEIDNYTDIIYSLIEESQNQQEKNEEDLLKLDSWASLWNWFSISKWLWYIKIF
IMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRHPAPRGPDRPEGIEEESGDRDRD
RYTPLAGGFLEIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWELLKYWWNLLQ
YWSQELKNSAISLFNATAIAVAEGTDRIIEVAQRAFRAILHIPRRIRQGLERALL"
BASE COUNT 939 a 473 c 637 g 631 t
ORIGIN
1 atgagagtga aggggatcag gaagaattat cagcactggt ggaaaggggg catcttgctc
61 cttgggatgt taatgatctg tagggctgaa aaagacaagt gggtcacagt ttattatgga
121 gtacctgtgt ggaaagaagc aaacaccact ctattctgtg cctcagatgc taaagcatat
181 tcaatagagg cacataatgt ttgggccaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatag tattgggaaa tgtgacagaa acttttaatg tgtggaaaaa taacatggta
301 gatcagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaaa
361 ttaaccccac tctgtgttac tttaaattgc actaatgtga aaagtaatgg tacttccccc
421 cctactacta gtagtagctg gaaaacagtg aaggaaggag aaataaaaaa ctgctctttc
481 aatattacca cagacatgaa agaaaaggta gagaaaaaac atgcaatttt ttatgacctt
541 gatgtaatgc cactagataa ttccagcaac agctataggt tgataagttg taacacctca
601 cgtattacac aggcctgtcc aaagatatcc tttgaaccaa ttcccataca ttattgtgcc
661 ccggctggtt ttgcgattct aaagtgtaat gataagaagt tcaataaaac aggacattgt
721 caaaatgtca gcacagtaca atgtacacat ggaattaagc cagtagtatc aactcaactg
781 ctgttaaatg gcagtctagc agaacaagat gtagaaatta gatctgaaaa tttcacgaac
841 aatgctaaaa ccataatagt acagctgaaa gatcctgtag aaattagttg tgcaagaccc
901 aacaacaata caagagacag tatacatatg ggaccaggaa aagcatttta tacaacagga
961 gacataatag gagatataag acaagcacat tgcaacatta gtgaagcaaa atggaataaa
1021 actttagaac aggtggttgg taaattaaga gaacaatttg ggaataaaat aataaagttt
1081 aatcaatcct caggagggga cccagaaatt acaatgcaca gttttaattg tagaggggaa
1141 tttttctact gtaatacaac gaaactgttt aatagtgttt ggaatgctac tgaaagaaat
1201 ggcactcaga atgttactga taaaacaatc acactcccgt gcagaataaa acaaattata
1261 aacatgtggc agcaagtagg aaaagcaatg tatgcccctc ccatcagtgg attacttaat
1321 tgttcatcaa atattacagg actactaata acaagagatg gtggtaataa tgggaacaat
1381 gacacagaga ccttcagacc tggaggagga gatatgaggg acaattggag aagtgaatta
1441 tataaatata aagtagtaag aattgaacca ataggcatag cacccaccga ggcaaagaga
1501 agagtggtgc agagagaaaa aagagcagtg ggaataggag ctttgttcct tgggttcttg
1561 ggagcagcag gaagcactat gggcgcagcg tcgataacgc tgacggtaca ggccagacaa
1621 ttattgtctg gtatagtgca acagcagaac aacctgctga gggctattga ggcgcaacag
1681 catctgttgc aactcacagt ctggggcatc aagcagctcc aggcaagagt cctagctgta
1741 gaaagatacc taagggatca acagctcctg gggatttggg gctgctctgg aaaactcatc
1801 tgcaccactg ctgtgccttg gaataacagt tggagtgata aaaatctgag tgccatttgg
1861 gaaaccatga cctggatgca gtgggaaaaa gaaattgaca attacacaga cataatatac
1921 agcttaattg aagaatcgca gaaccaacaa gaaaagaatg aagaggactt attaaaattg
1981 gattcatggg caagtttgtg gaattggttt agcatatcaa aatggctgtg gtatataaaa
2041 atattcataa tgatagtagg aggcttgata ggtttaagaa tagtttttac tgtactttct
2101 atagtaaata gagttaggca gggatactca cccttatcgt ttcagacccg ccacccagcc
2161 ccgaggggac ccgacaggcc cgaaggaatc gaagaagaaa gtggagacag agacagagac
2221 agatacactc cattagcggg tggattctta gaaatcatct gggtcgacct gcggagcctg
2281 tgcctcttca gctaccaccg cttgagagac ttactcttga ttgtaacgag gattgtggaa
2341 cttctgggac gcagggggtg ggaactcctc aaatattggt ggaacctcct ccagtattgg
2401 agtcaggaac taaagaatag tgctattagc ttattcaacg ccacagccat agcagtagct
2461 gaggggacag ataggattat agaagtagca caaagagcct ttagagctat cctccacata
2521 cctagaagaa taagacaggg cttggaaagg gctttgctat aagatgggtg gcaagtggtc
2581 aaagcgtagt gtgcctggat ggtctactat aagggaaaga atgagacgag ctgagccagc
2641 agcagttgga gtaggagcag catctagaga cctagaaaaa
//
last modified: Tue May 31 10:56 2022