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LOCUS	    JN786714		    2680 bp    DNA     linear	VRL 30-OCT-2011
DEFINITION  HIV-1 clone 6568SP6-10-1.PRO from USA envelope glycoprotein gene,
	    complete cds
ACCESSION   JN786714
VERSION     JN786714.1 GI:353741470
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2680)
            Show all sequences for reference 1
  AUTHORS   Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
	    Simmonds,P. and Clapham,P.R.
  TITLE     Independent evolution of macrophage-tropism and increased charge
	    between HIV-1 R5 envelopes present in brain and immune tissue.
  JOURNAL   Retrovirology. 2012 Mar 15;9:20. doi: 10.1186/1742-4690-9-20.
  PUBMED    22420378
REFERENCE   2 (bases 1 to 2680)
            Show all sequences for reference 2
  AUTHORS   Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
	    Simmonds,P. and Clapham,P.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-SEP-2011) Program in Molecular Medicine and
	    Department of Medical School, University of Massachusetts Medical
	    School, 373 Plantation Street Biotech II Suite 315, Worcester, MA
	    01605, USA
FEATURES             Location/Qualifiers
     source	     1..2680
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolation_source="patient 6568 spleen"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="6568SP6-10-1.PRO"
		     /country="USA"
		     /collection_date="2001"
		     /note="subtype: B"
     CDS	     1..2562
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AER22448.1"
		     /db_xref="GI:353741471"
		     /translation="MRVKGIRKNYQHWWKGGILLLGMLMICRAEKDKWVTVYYGVPVW
		     KEANTTLFCASDAKAYSIEAHNVWATHACVPTDPNPQEIVLGNVTETFNVWKNNMVDQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCTNVKSNGTSPPTTSSSWKTVKEGEIKNCSF
		     NITTDMKEKVEKKHAIFYDLDVMPLDNSSNSYRLISCNTSRITQACPKISFEPIPIHY
		     CAPAGFAILKCNDKKFNKTGHCQNVSTVQCTHGIKPVVSTQLLLNGSLAEQDVEIRSE
		     NFTNNAKTIIVQLKDPVEISCARPNNNTRDSIHMGPGKAFYTTGDIIGDIRQAHCNIS
		     EAKWNKTLEQVVGKLREQFGNKIIKFNQSSGGDPEITMHSFNCRGEFFYCNTTKLFNS
		     VWNATERNGTQNVTDKTITLPCRIKQIINMWQQVGKAMYAPPISGLLNCSSNITGLLI
		     TRDGGNNGNNDTETFRPGGGDMRDNWRSELYKYKVVRIEPIGIAPTEAKRRVVQREKR
		     AVGIGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLT
		     VWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTAVPWNNSWSDKNLSAIWETMT
		     WMQWEKEIDNYTDIIYSLIEESQNQQEKNEEDLLKLDSWASLWNWFSISKWLWYIKIF
		     IMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRHPAPRGPDRPEGIEEESGDRDRD
		     RYTPLAGGFLEIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWELLKYWWNLLQ
		     YWSQELKNSAISLFNATAIAVAEGTDRIIEVAQRAFRAILHIPRRIRQGLERALL"
BASE COUNT	939 a	 473 c	  637 g    631 t
ORIGIN
       1 atgagagtga aggggatcag gaagaattat cagcactggt ggaaaggggg catcttgctc 
      61 cttgggatgt taatgatctg tagggctgaa aaagacaagt gggtcacagt ttattatgga 
     121 gtacctgtgt ggaaagaagc aaacaccact ctattctgtg cctcagatgc taaagcatat 
     181 tcaatagagg cacataatgt ttgggccaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaatag tattgggaaa tgtgacagaa acttttaatg tgtggaaaaa taacatggta 
     301 gatcagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaaa 
     361 ttaaccccac tctgtgttac tttaaattgc actaatgtga aaagtaatgg tacttccccc 
     421 cctactacta gtagtagctg gaaaacagtg aaggaaggag aaataaaaaa ctgctctttc 
     481 aatattacca cagacatgaa agaaaaggta gagaaaaaac atgcaatttt ttatgacctt 
     541 gatgtaatgc cactagataa ttccagcaac agctataggt tgataagttg taacacctca 
     601 cgtattacac aggcctgtcc aaagatatcc tttgaaccaa ttcccataca ttattgtgcc 
     661 ccggctggtt ttgcgattct aaagtgtaat gataagaagt tcaataaaac aggacattgt 
     721 caaaatgtca gcacagtaca atgtacacat ggaattaagc cagtagtatc aactcaactg 
     781 ctgttaaatg gcagtctagc agaacaagat gtagaaatta gatctgaaaa tttcacgaac 
     841 aatgctaaaa ccataatagt acagctgaaa gatcctgtag aaattagttg tgcaagaccc 
     901 aacaacaata caagagacag tatacatatg ggaccaggaa aagcatttta tacaacagga 
     961 gacataatag gagatataag acaagcacat tgcaacatta gtgaagcaaa atggaataaa 
    1021 actttagaac aggtggttgg taaattaaga gaacaatttg ggaataaaat aataaagttt 
    1081 aatcaatcct caggagggga cccagaaatt acaatgcaca gttttaattg tagaggggaa 
    1141 tttttctact gtaatacaac gaaactgttt aatagtgttt ggaatgctac tgaaagaaat 
    1201 ggcactcaga atgttactga taaaacaatc acactcccgt gcagaataaa acaaattata 
    1261 aacatgtggc agcaagtagg aaaagcaatg tatgcccctc ccatcagtgg attacttaat 
    1321 tgttcatcaa atattacagg actactaata acaagagatg gtggtaataa tgggaacaat 
    1381 gacacagaga ccttcagacc tggaggagga gatatgaggg acaattggag aagtgaatta 
    1441 tataaatata aagtagtaag aattgaacca ataggcatag cacccaccga ggcaaagaga 
    1501 agagtggtgc agagagaaaa aagagcagtg ggaataggag ctttgttcct tgggttcttg 
    1561 ggagcagcag gaagcactat gggcgcagcg tcgataacgc tgacggtaca ggccagacaa 
    1621 ttattgtctg gtatagtgca acagcagaac aacctgctga gggctattga ggcgcaacag 
    1681 catctgttgc aactcacagt ctggggcatc aagcagctcc aggcaagagt cctagctgta 
    1741 gaaagatacc taagggatca acagctcctg gggatttggg gctgctctgg aaaactcatc 
    1801 tgcaccactg ctgtgccttg gaataacagt tggagtgata aaaatctgag tgccatttgg 
    1861 gaaaccatga cctggatgca gtgggaaaaa gaaattgaca attacacaga cataatatac 
    1921 agcttaattg aagaatcgca gaaccaacaa gaaaagaatg aagaggactt attaaaattg 
    1981 gattcatggg caagtttgtg gaattggttt agcatatcaa aatggctgtg gtatataaaa 
    2041 atattcataa tgatagtagg aggcttgata ggtttaagaa tagtttttac tgtactttct 
    2101 atagtaaata gagttaggca gggatactca cccttatcgt ttcagacccg ccacccagcc 
    2161 ccgaggggac ccgacaggcc cgaaggaatc gaagaagaaa gtggagacag agacagagac 
    2221 agatacactc cattagcggg tggattctta gaaatcatct gggtcgacct gcggagcctg 
    2281 tgcctcttca gctaccaccg cttgagagac ttactcttga ttgtaacgag gattgtggaa 
    2341 cttctgggac gcagggggtg ggaactcctc aaatattggt ggaacctcct ccagtattgg 
    2401 agtcaggaac taaagaatag tgctattagc ttattcaacg ccacagccat agcagtagct 
    2461 gaggggacag ataggattat agaagtagca caaagagcct ttagagctat cctccacata 
    2521 cctagaagaa taagacaggg cttggaaagg gctttgctat aagatgggtg gcaagtggtc 
    2581 aaagcgtagt gtgcctggat ggtctactat aagggaaaga atgagacgag ctgagccagc 
    2641 agcagttgga gtaggagcag catctagaga cctagaaaaa 
//
last modified: Tue May 31 10:56 2022


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