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LOCUS JN786686 2701 bp DNA linear VRL 30-OCT-2011
DEFINITION HIV-1 clone 6568FL5-47-202.PRO from USA envelope glycoprotein gene,
complete cds
ACCESSION JN786686
VERSION JN786686.1 GI:353741416
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2701)
Show all sequences for reference 1
AUTHORS Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
Simmonds,P. and Clapham,P.R.
TITLE Independent evolution of macrophage-tropism and increased charge
between HIV-1 R5 envelopes present in brain and immune tissue.
JOURNAL Retrovirology. 2012 Mar 15;9:20. doi: 10.1186/1742-4690-9-20.
PUBMED 22420378
REFERENCE 2 (bases 1 to 2701)
Show all sequences for reference 2
AUTHORS Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
Simmonds,P. and Clapham,P.R.
TITLE Direct Submission
JOURNAL Submitted (23-SEP-2011) Program in Molecular Medicine and
Department of Medical School, University of Massachusetts Medical
School, 373 Plantation Street Biotech II Suite 315, Worcester, MA
01605, USA
FEATURES Location/Qualifiers
source 1..2701
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="patient 6568 frontal lobe"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="6568FL5-47-202.PRO"
/country="USA"
/collection_date="2001"
/note="subtype: B"
CDS 1..2553
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AER22422.1"
/db_xref="GI:353741417"
/translation="MRVKGIRKNYQHWWKGGILLLWILMICRAEEDKWVTVYYGVPVW
KEADTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVDQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTDVKNNGTNTTSNDWETMKEGEIKNCSFNI
TTDMRDKVEKKYAVFYDLDIMPIVNTNNYRLISCNTSVITQACPKVSFEPIPIHYCAP
AGFAILKCNDKTFNGTGRCYNVSTVQCTHGIRPVVSTQLLLNGSLAEGEVVIRSENFT
NNAKTIIVQLKEPVNISCTRPNNNTRKSIHIGPGRAFFATDIIGDIRQAHCNISKAAW
DDTFQQVAKKLRAQFDNKTIIFNHSSGGDPEIVMHSFNCGGEFFYCDTTKLFNSNYTW
NGTESTNDTRGNETIILPCRIKQIINMWQEVGKAMYAPPISGLLNCSSTITGLLITRD
GGHGNGTKPEIFRPGGGDMRDNWRSELYKYKVVRIEPIGIAPTKAKRRVVQREKRAVG
IGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWG
IKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTAVPWNNSWSNKSLSAIWDNMTWME
WEREIDSYTNIIYSLIEESQNQQEKNEQDLLKLDTWASLWNWFSISNWLWYIRLFIMI
IGGLICLRIVFTVLSIVNRVRQGYSPLSFQTRHLAPRGPDRPKGIEEEGGDRDRDRST
PLVGGFLEIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWELLKYWWNLLQYWT
QELKKSAISLFNATAIAVAEGTDRIIAVAQRAFRAILHIPRRIRQGLERALL"
BASE COUNT 924 a 483 c 661 g 633 t
ORIGIN
1 atgagagtga aggggatcag gaagaattat cagcactggt ggaaaggggg catcttgctc
61 ctatggatat tgatgatctg tagggctgaa gaagacaagt gggtcacagt ctattatgga
121 gtacctgtgt ggaaagaagc agacaccact ctattttgtg cctcagatgc taaagcatat
181 acaacagagg cacataatgt ttgggccaca catgcctgtg tacccacaga ccccaatcca
241 caagaagtag tattagaaaa tgtgacagaa aattttaata tgtggaaaaa taacatggta
301 gaccagatgc atgaggatat aatcagctta tgggatcaaa gcctaaagcc atgtgtaaaa
361 ttaaccccac tctgtgttac tttaaattgc actgatgtga agaataatgg tactaatact
421 actagcaatg actgggaaac aatgaaggaa ggagaaataa agaactgttc tttcaatatc
481 accacagaca tgagagataa ggtagagaaa aaatatgcag ttttttatga ccttgatata
541 atgccaatag ttaataccaa caactatagg ttgataagtt gtaacacctc agtcattaca
601 caggcctgtc caaaggtatc ctttgaacca attcccatac attattgtgc cccggctggt
661 tttgcgattc taaagtgtaa tgataagaca ttcaatggaa caggacgatg ttacaatgtc
721 agcacagtac aatgtacaca tggaattagg ccagtagtat caactcaact gctgttaaac
781 ggcagtctag cagaaggaga ggtagtaatt agatctgaga atttcacgaa taatgctaaa
841 accataatag tacagctgaa agagcctgta aacattagtt gtacaagacc caacaacaat
901 acaagaaaaa gtatacatat agggccaggg agagcatttt ttgcaacaga cataatagga
961 gatataagac aggcacattg caacattagt aaagcagcat gggatgacac tttccaacag
1021 gtagcaaaaa aattaagagc acaatttgat aataagacca taatctttaa tcactcctca
1081 ggaggggacc cagaaattgt aatgcacagt tttaattgtg gaggggaatt tttctactgt
1141 gatacaacaa aactgtttaa tagtaattat acctggaatg gtactgaaag tacaaatgat
1201 actagaggaa atgagacaat catactcccg tgcagaataa aacaaattat aaacatgtgg
1261 caggaagtag gaaaagcaat gtatgcccct cccatcagtg gactacttaa ttgttcatca
1321 actattacag gactactaat aacaagagat ggtggtcatg ggaacgggac caagccagag
1381 atcttcagac ctggaggagg agatatgagg gacaattgga gaagtgaatt atataaatat
1441 aaagtagtaa gaattgaacc aataggcata gcacccacca aggcaaaaag aagagtggtg
1501 cagagagaaa aaagagcagt gggaatagga gctctgttcc ttgggttctt gggagcagca
1561 ggaagcacta tgggcgcagc gtcaataacg ctgacggtac aggccagaca attattgtct
1621 ggtatagtgc aacagcagaa caacttgctg agggctattg aggcgcaaca gcatctgttg
1681 caactcacag tctggggcat caagcagctc caggcaagag tcctagctgt ggaaagatac
1741 ctaagggatc aacagctcct gggaatttgg ggctgctctg gaaaactcat ctgcaccact
1801 gctgtgcctt ggaataatag ttggagtaat aaatctctga gtgctatttg ggataacatg
1861 acctggatgg agtgggaaag agaaattgac agttacacaa acataatata cagcttaatt
1921 gaagaatcgc agaaccaaca agaaaagaat gaacaggact tgttgaaatt ggatacatgg
1981 gcaagtttgt ggaattggtt tagcatatca aattggctgt ggtatataag gttattcata
2041 atgataatag gaggcttgat atgtttaaga atagttttta ctgtactttc tatagtaaat
2101 agagttaggc agggatactc acccttatcg tttcagaccc gccacctagc cccgagggga
2161 cccgacaggc ccaaaggaat cgaagaagaa ggtggagaca gagacagaga cagatccact
2221 ccattagtgg gtggattctt agaaatcatc tgggtcgacc tgcggagcct gtgcctcttc
2281 agctaccacc gcttgagaga cttactcttg attgtaacga ggattgtgga acttctggga
2341 cgcagggggt gggaactcct caaatactgg tggaacctcc tccagtattg gactcaggaa
2401 ctaaagaaga gtgctattag cttgttcaac gccacagcca tagcagtagc tgaggggaca
2461 gataggatta tagcagtagc acaaagagcc tttagagcta tcctccacat acctagaaga
2521 ataagacagg gcttggaaag ggctttgcta taagatgggt ggcaagtggt caaaacatag
2581 tatgcctgga tggcttacta caagggaaag aatgaggcga gctgagccag cagcagaaag
2641 ggggagacaa gttgagccag cagcagttgg ggtgggagca gtatctcgag acggatccag
2701 c
//
last modified: Tue May 31 10:56 2022