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LOCUS	    JN786686		    2701 bp    DNA     linear	VRL 30-OCT-2011
DEFINITION  HIV-1 clone 6568FL5-47-202.PRO from USA envelope glycoprotein gene,
	    complete cds
ACCESSION   JN786686
VERSION     JN786686.1 GI:353741416
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2701)
            Show all sequences for reference 1
  AUTHORS   Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
	    Simmonds,P. and Clapham,P.R.
  TITLE     Independent evolution of macrophage-tropism and increased charge
	    between HIV-1 R5 envelopes present in brain and immune tissue.
  JOURNAL   Retrovirology. 2012 Mar 15;9:20. doi: 10.1186/1742-4690-9-20.
  PUBMED    22420378
REFERENCE   2 (bases 1 to 2701)
            Show all sequences for reference 2
  AUTHORS   Gonzalez-Perez,M.P., O'Connell,O., Lin,R., Sullivan,W.M., Bell,J.,
	    Simmonds,P. and Clapham,P.R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-SEP-2011) Program in Molecular Medicine and
	    Department of Medical School, University of Massachusetts Medical
	    School, 373 Plantation Street Biotech II Suite 315, Worcester, MA
	    01605, USA
FEATURES             Location/Qualifiers
     source	     1..2701
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolation_source="patient 6568 frontal lobe"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="6568FL5-47-202.PRO"
		     /country="USA"
		     /collection_date="2001"
		     /note="subtype: B"
     CDS	     1..2553
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AER22422.1"
		     /db_xref="GI:353741417"
		     /translation="MRVKGIRKNYQHWWKGGILLLWILMICRAEEDKWVTVYYGVPVW
		     KEADTTLFCASDAKAYTTEAHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVDQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCTDVKNNGTNTTSNDWETMKEGEIKNCSFNI
		     TTDMRDKVEKKYAVFYDLDIMPIVNTNNYRLISCNTSVITQACPKVSFEPIPIHYCAP
		     AGFAILKCNDKTFNGTGRCYNVSTVQCTHGIRPVVSTQLLLNGSLAEGEVVIRSENFT
		     NNAKTIIVQLKEPVNISCTRPNNNTRKSIHIGPGRAFFATDIIGDIRQAHCNISKAAW
		     DDTFQQVAKKLRAQFDNKTIIFNHSSGGDPEIVMHSFNCGGEFFYCDTTKLFNSNYTW
		     NGTESTNDTRGNETIILPCRIKQIINMWQEVGKAMYAPPISGLLNCSSTITGLLITRD
		     GGHGNGTKPEIFRPGGGDMRDNWRSELYKYKVVRIEPIGIAPTKAKRRVVQREKRAVG
		     IGALFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWG
		     IKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTAVPWNNSWSNKSLSAIWDNMTWME
		     WEREIDSYTNIIYSLIEESQNQQEKNEQDLLKLDTWASLWNWFSISNWLWYIRLFIMI
		     IGGLICLRIVFTVLSIVNRVRQGYSPLSFQTRHLAPRGPDRPKGIEEEGGDRDRDRST
		     PLVGGFLEIIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWELLKYWWNLLQYWT
		     QELKKSAISLFNATAIAVAEGTDRIIAVAQRAFRAILHIPRRIRQGLERALL"
BASE COUNT	924 a	 483 c	  661 g    633 t
ORIGIN
       1 atgagagtga aggggatcag gaagaattat cagcactggt ggaaaggggg catcttgctc 
      61 ctatggatat tgatgatctg tagggctgaa gaagacaagt gggtcacagt ctattatgga 
     121 gtacctgtgt ggaaagaagc agacaccact ctattttgtg cctcagatgc taaagcatat 
     181 acaacagagg cacataatgt ttgggccaca catgcctgtg tacccacaga ccccaatcca 
     241 caagaagtag tattagaaaa tgtgacagaa aattttaata tgtggaaaaa taacatggta 
     301 gaccagatgc atgaggatat aatcagctta tgggatcaaa gcctaaagcc atgtgtaaaa 
     361 ttaaccccac tctgtgttac tttaaattgc actgatgtga agaataatgg tactaatact 
     421 actagcaatg actgggaaac aatgaaggaa ggagaaataa agaactgttc tttcaatatc 
     481 accacagaca tgagagataa ggtagagaaa aaatatgcag ttttttatga ccttgatata 
     541 atgccaatag ttaataccaa caactatagg ttgataagtt gtaacacctc agtcattaca 
     601 caggcctgtc caaaggtatc ctttgaacca attcccatac attattgtgc cccggctggt 
     661 tttgcgattc taaagtgtaa tgataagaca ttcaatggaa caggacgatg ttacaatgtc 
     721 agcacagtac aatgtacaca tggaattagg ccagtagtat caactcaact gctgttaaac 
     781 ggcagtctag cagaaggaga ggtagtaatt agatctgaga atttcacgaa taatgctaaa 
     841 accataatag tacagctgaa agagcctgta aacattagtt gtacaagacc caacaacaat 
     901 acaagaaaaa gtatacatat agggccaggg agagcatttt ttgcaacaga cataatagga 
     961 gatataagac aggcacattg caacattagt aaagcagcat gggatgacac tttccaacag 
    1021 gtagcaaaaa aattaagagc acaatttgat aataagacca taatctttaa tcactcctca 
    1081 ggaggggacc cagaaattgt aatgcacagt tttaattgtg gaggggaatt tttctactgt 
    1141 gatacaacaa aactgtttaa tagtaattat acctggaatg gtactgaaag tacaaatgat 
    1201 actagaggaa atgagacaat catactcccg tgcagaataa aacaaattat aaacatgtgg 
    1261 caggaagtag gaaaagcaat gtatgcccct cccatcagtg gactacttaa ttgttcatca 
    1321 actattacag gactactaat aacaagagat ggtggtcatg ggaacgggac caagccagag 
    1381 atcttcagac ctggaggagg agatatgagg gacaattgga gaagtgaatt atataaatat 
    1441 aaagtagtaa gaattgaacc aataggcata gcacccacca aggcaaaaag aagagtggtg 
    1501 cagagagaaa aaagagcagt gggaatagga gctctgttcc ttgggttctt gggagcagca 
    1561 ggaagcacta tgggcgcagc gtcaataacg ctgacggtac aggccagaca attattgtct 
    1621 ggtatagtgc aacagcagaa caacttgctg agggctattg aggcgcaaca gcatctgttg 
    1681 caactcacag tctggggcat caagcagctc caggcaagag tcctagctgt ggaaagatac 
    1741 ctaagggatc aacagctcct gggaatttgg ggctgctctg gaaaactcat ctgcaccact 
    1801 gctgtgcctt ggaataatag ttggagtaat aaatctctga gtgctatttg ggataacatg 
    1861 acctggatgg agtgggaaag agaaattgac agttacacaa acataatata cagcttaatt 
    1921 gaagaatcgc agaaccaaca agaaaagaat gaacaggact tgttgaaatt ggatacatgg 
    1981 gcaagtttgt ggaattggtt tagcatatca aattggctgt ggtatataag gttattcata 
    2041 atgataatag gaggcttgat atgtttaaga atagttttta ctgtactttc tatagtaaat 
    2101 agagttaggc agggatactc acccttatcg tttcagaccc gccacctagc cccgagggga 
    2161 cccgacaggc ccaaaggaat cgaagaagaa ggtggagaca gagacagaga cagatccact 
    2221 ccattagtgg gtggattctt agaaatcatc tgggtcgacc tgcggagcct gtgcctcttc 
    2281 agctaccacc gcttgagaga cttactcttg attgtaacga ggattgtgga acttctggga 
    2341 cgcagggggt gggaactcct caaatactgg tggaacctcc tccagtattg gactcaggaa 
    2401 ctaaagaaga gtgctattag cttgttcaac gccacagcca tagcagtagc tgaggggaca 
    2461 gataggatta tagcagtagc acaaagagcc tttagagcta tcctccacat acctagaaga 
    2521 ataagacagg gcttggaaag ggctttgcta taagatgggt ggcaagtggt caaaacatag 
    2581 tatgcctgga tggcttacta caagggaaag aatgaggcga gctgagccag cagcagaaag 
    2641 ggggagacaa gttgagccag cagcagttgg ggtgggagca gtatctcgag acggatccag 
    2701 c
//
last modified: Tue May 31 10:56 2022


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