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LOCUS	    JN665041		    1197 bp    DNA     linear	VRL 01-FEB-2012
DEFINITION  HIV-1 isolate 1012654 from South Africa pol protein (pol) gene,
	    partial cds
ACCESSION   JN665041
VERSION     JN665041.1 GI:374095083
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1197)
            Show all sequences for reference 1
  AUTHORS   Manasa,J., Katzenstein,D., Cassol,S., Newell,M.L. and de,O.
  TITLE     Primary Drug Resistance in South Africa: Data from 10 Years of
	    Surveys.
  JOURNAL   AIDS Res Hum Retroviruses. 2012 Mar 12.
  PUBMED    22251009
REFERENCE   2 (bases 1 to 1197)
            Show all sequences for reference 2
  AUTHORS   Manasa,J., Katzenstein,D., Cassol,S., Newell,M.-L. and de
	    Oliveira,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2011) Africa Centre For Health and Population
	    Studies, University of KwaZulu Natal, 719 Umbilo Road, Durban,
	    KwaZulu Natal 4013, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
	    Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
	    Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
	    Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
	    Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
	    Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
	    Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
  TITLE     Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
	    Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
	    Analysis.
  JOURNAL   EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
	    10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
  PUBMED    31143879
FEATURES             Location/Qualifiers
     source	     1..1197
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="1012654"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="29-Jul-2010"
		     /note="subtype: C"
     gene	     <1..>1197
		     /gene="pol"
     CDS	     <1..>1197
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEY84848.1"
		     /db_xref="GI:374095084"
		     /translation="PQITLWQRPLVSIKVGGQTKEALLDTGADDTVLEEISLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKIKQWPLTEEKIKALTAICEDMEKEGKITKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRAQNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPITLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTDIV
		     PLTEEAE"
BASE COUNT	469 a	 198 c	  256 g    273 t      1 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtctcaataa aagtaggagg ccagacaaag 
      61 gaggctctgt tagacacagg agcagatgat acagtattag aagaaataag tttgccaggg 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta ttaaagtaag acagtatgat 
     181 caaatactta tagaaatttg tgggaaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg actcaacttg ggtgcacact aaattttcca 
     301 attagcccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaagatt 
     361 aaacaatggc cactaacaga agaaaaaata aaagcattaa cagcaatttg tgaagatatg 
     421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc cgtataayac tccaatattt 
     481 gctataaaaa agaaggacag tactaagtgg aggaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagacttttg ggaggtccaa ttaggaatac cacacccagc aggattaaaa 
     601 aagaaaaaat cagtgacagt cctggatgtg ggggatgcat atttttcagt tcctttagat 
     661 gaaggtttca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg 
     721 attagatatc aatataatgt gctcccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga taaaaatctt agagcctttt agggcacaaa atccagaaat agtcatctat 
     841 caatatatgg atgacttata tgtaggatct gacttagaaa tagggcagca cagagcaaaa 
     901 atagaggagt taagagcaca tctattaaag tggggattca ccacgccaga taaaaaacat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcccataa cattgccaga aaaggatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttat gcagggatta aagtgaagca actttgtaaa 
    1141 ctccttaggg ggaccaaagc actaacagac atagtaccac taactgaaga agcagaa
//
last modified: Tue May 31 10:56 2022


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