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LOCUS JN665041 1197 bp DNA linear VRL 01-FEB-2012
DEFINITION HIV-1 isolate 1012654 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JN665041
VERSION JN665041.1 GI:374095083
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1197)
Show all sequences for reference 1
AUTHORS Manasa,J., Katzenstein,D., Cassol,S., Newell,M.L. and de,O.
TITLE Primary Drug Resistance in South Africa: Data from 10 Years of
Surveys.
JOURNAL AIDS Res Hum Retroviruses. 2012 Mar 12.
PUBMED 22251009
REFERENCE 2 (bases 1 to 1197)
Show all sequences for reference 2
AUTHORS Manasa,J., Katzenstein,D., Cassol,S., Newell,M.-L. and de
Oliveira,T.
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2011) Africa Centre For Health and Population
Studies, University of KwaZulu Natal, 719 Umbilo Road, Durban,
KwaZulu Natal 4013, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
TITLE Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
Analysis.
JOURNAL EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
PUBMED 31143879
FEATURES Location/Qualifiers
source 1..1197
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="1012654"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="29-Jul-2010"
/note="subtype: C"
gene <1..>1197
/gene="pol"
CDS <1..>1197
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEY84848.1"
/db_xref="GI:374095084"
/translation="PQITLWQRPLVSIKVGGQTKEALLDTGADDTVLEEISLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKIKQWPLTEEKIKALTAICEDMEKEGKITKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRAQNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELRAHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPITLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTDIV
PLTEEAE"
BASE COUNT 469 a 198 c 256 g 273 t 1 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtctcaataa aagtaggagg ccagacaaag
61 gaggctctgt tagacacagg agcagatgat acagtattag aagaaataag tttgccaggg
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta ttaaagtaag acagtatgat
181 caaatactta tagaaatttg tgggaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatatgttg actcaacttg ggtgcacact aaattttcca
301 attagcccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaagatt
361 aaacaatggc cactaacaga agaaaaaata aaagcattaa cagcaatttg tgaagatatg
421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc cgtataayac tccaatattt
481 gctataaaaa agaaggacag tactaagtgg aggaaattag tagatttcag ggaactcaat
541 aaaagaactc aagacttttg ggaggtccaa ttaggaatac cacacccagc aggattaaaa
601 aagaaaaaat cagtgacagt cctggatgtg ggggatgcat atttttcagt tcctttagat
661 gaaggtttca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg
721 attagatatc aatataatgt gctcccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga taaaaatctt agagcctttt agggcacaaa atccagaaat agtcatctat
841 caatatatgg atgacttata tgtaggatct gacttagaaa tagggcagca cagagcaaaa
901 atagaggagt taagagcaca tctattaaag tggggattca ccacgccaga taaaaaacat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcccataa cattgccaga aaaggatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttat gcagggatta aagtgaagca actttgtaaa
1141 ctccttaggg ggaccaaagc actaacagac atagtaccac taactgaaga agcagaa
//
last modified: Tue May 31 10:56 2022