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LOCUS JN664988 1196 bp DNA linear VRL 01-FEB-2012
DEFINITION HIV-1 isolate 1001752 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JN664988
VERSION JN664988.1 GI:374094977
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1196)
Show all sequences for reference 1
AUTHORS Manasa,J., Katzenstein,D., Cassol,S., Newell,M.L. and de,O.
TITLE Primary Drug Resistance in South Africa: Data from 10 Years of
Surveys.
JOURNAL AIDS Res Hum Retroviruses. 2012 Mar 12.
PUBMED 22251009
REFERENCE 2 (bases 1 to 1196)
Show all sequences for reference 2
AUTHORS Manasa,J., Katzenstein,D., Cassol,S., Newell,M.-L. and de
Oliveira,T.
TITLE Direct Submission
JOURNAL Submitted (10-SEP-2011) Africa Centre For Health and Population
Studies, University of KwaZulu Natal, 719 Umbilo Road, Durban,
KwaZulu Natal 4013, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Chimukangara,B., Lessells,R.J., Rhee,S.-Y., Giandhari,J.,
Kharsany,A.B.M., Naidoo,K., Lewis,L., Cawood,C., Khanyile,D.,
Ayalew,K.A., Diallo,K., Samuel,R., Hunt,G., Vandormael,A.,
Stray-Pedersen,B., Gordon,M., Makadzange,T., Kiepiela,P.,
Ramjee,G., Ledwaba,J., Kalimashe,M., Morris,L., Parikh,U.M.,
Mellors,J.W., Shafer,R.W., Katzenstein,D., Moodley,P., Gupta,R.K.,
Pillay,D., Abdool Karim,S.S. and de Oliveira,T.
TITLE Trends in Pretreatment HIV-1 Drug Resistance in Antiretroviral
Therapy-naive Adults in South Africa, 2000-2016: A Pooled Sequence
Analysis.
JOURNAL EClinicalMedicine. 2019 Mar 18;9:26-34. doi:
10.1016/j.eclinm.2019.03.006. eCollection 2019 Mar.
PUBMED 31143879
FEATURES Location/Qualifiers
source 1..1196
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="1001752"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="29-Jul-2010"
/note="subtype: C"
gene <1..>1196
/gene="pol"
CDS <1..>1196
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEY84795.1"
/db_xref="GI:374094978"
/translation="PQITLWQRPLVSIKIGGQIREALLDTGADDTVLEEMSLPGKWKP
KMIGGIGGFIKVRQYDQIPLEICGKKAIGTVLIGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVRLKPGMDGPKVKQWPLTEEKIKALTAICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMIKILEPFRKKNPE
IVIYQYMDDLYVGSDLEIGQHRVKVEELRAHLLEWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKRLCKLLRGAKALTDIV
PLTEEA"
BASE COUNT 460 a 198 c 265 g 273 t
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtctcaataa aaataggggg ccagataagg
61 gaggctctct tagacacagg agcagacgat acagtattag aagaaatgag tctgccagga
121 aaatggaagc caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatacctt tagaaatttg tggaaaaaag gctataggta cagtgttaat aggacctaca
241 cctgtcaaca taattggaag gaatatgttg actcagcttg ggtgtacact aaattttcca
301 attagtccta ttgaaactgt accagtaaga ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagcaatttg tgaagaaatg
421 gagaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagacttttg ggaggttcaa ttaggaatac cacacccagc aggattaaaa
601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcagt tcctttagat
661 gaagacttca ggaagtatac tgcattcacc atacctagta taaacaatga aacaccagga
721 attagatatc aatataatgt gctgccacag ggatggaaag gatcgccagc aatattccag
781 agtagcatga taaaaatctt agagcccttc agaaagaaaa atccagaaat agtcatctat
841 cagtatatgg atgacttgta tgtaggatct gacttagaaa taggacaaca tagagtaaaa
901 gtagaggagt taagagcaca tttacttgag tggggattta ccacaccaga caagaaacat
961 cagaaggaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctgccaga aaaggatagc tggactgtca atgatataca gaagctagtg
1081 ggaaaattaa attgggcaag tcagatttac ccagggatta aagtaaagcg actttgtaaa
1141 ctccttaggg gggccaaagc actaacagac atagtaccac taactgaaga agcaga
//
last modified: Tue May 31 10:56 2022