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LOCUS JN638117 1166 bp DNA linear VRL 26-SEP-2011
DEFINITION HIV-1 isolate A197 from South Africa pol protein (pol) and gag
protein (gag) genes, partial cds
ACCESSION JN638117
VERSION JN638117.1 GI:346420575
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1166)
Show all sequences for reference 1
AUTHORS van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
TITLE Antiretroviral resistance patterns and factors associated with
resistance in adult patients failing NNRTI-based regimens in the
western cape, South Africa
JOURNAL J. Med. Virol. 83 (10), 1764-1769 (2011)
PUBMED 21837793
REFERENCE 2 (bases 1 to 1166)
Show all sequences for reference 2
AUTHORS van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2011) Division of Medical Virology, Stellenbosch
University, Francie van Zijl Drive, Parow 7500, South Africa
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence name A197 Patient sex Female
Patient age 29 Patient comment d4T 3TC NVP CD4 count 193 Viral Load
4800 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..1166
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="A197"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="04-Sep-2008"
gene <1..>1166
/gene="pol"
CDS <1..>1166
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEO24073.1"
/db_xref="GI:346420577"
/translation="RANSPTSRELQVRGDNPRSEAGAERQGTLNFPQITLWQRPLVTI
KIGGQLKEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKVRQYDEIPIEICGKKA
IGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEK
IKALTAICEEMEKEGKITKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFW
EVQLGIPHPAGLKKNKSVTILDVGDAYFSVPLDENFRKYTAFTIPSTNNETPGIRYQY
NVLPQGWKGSPAIFQSSMTKILEPFRTKNPELVIYQYVDDLYVGSDLEIGQHRAKIEE
LREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQ"
gene <1..133
/gene="gag"
CDS <1..133
/gene="gag"
/codon_start="2"
/transl_table="1"
/product="gag protein"
/protein_id="AEO24072.1"
/db_xref="GI:346420576"
/translation="EPTAPPAESFRFEETTPAQKQEPKDREPLTSLKSLFGSDPLLQ"
BASE COUNT 456 a 211 c 245 g 254 t
ORIGIN
1 agagccaaca gccccaccag cagagagctt caggttcgag gagacaaccc ccgctcagaa
61 gcaggagccg aaagacaggg aacccttaac ttccctcaaa tcactctttg gcagcgaccc
121 cttgttacaa taaaaatagg gggccaacta aaggaggctc tcttagatac aggagcagat
181 gatacagtat tagaagaaat aaatttgcca ggaaaatgga aaccaaaaat gataggggga
241 attggaggtt ttatcaaagt aagacaatat gatgaaatac ctatagaaat ttgtggaaaa
301 aaggctatag gtacagtgtt agtgggacct acacctgtca acataattgg aagaaacttg
361 ttgactcagc ttggatgcac actaaatttt ccaattagtc ccattgaaac tgtaccagta
421 aaactgaagc caggaatgga tggcccaaag gttaaacaat ggccattgac agaagaaaaa
481 ataaaagcat taacagcaat ttgtgaagag atggaaaagg aaggaaaaat tacaaaaatt
541 gggcctgaaa atccatataa cactccaata tttgccataa aaaagaaaga cagtactaaa
601 tggagaaaat tagtagattt cagggaactc aataaaagaa ctcaagactt ttgggaagtt
661 caattaggaa taccacatcc ggcagggtta aaaaagaaca aatcagtaac aatactggat
721 gtgggggatg catatttttc agttccttta gatgagaatt tcaggaaata tactgcattc
781 accataccta gtacaaacaa tgaaacacca gggattagat atcaatataa tgtgcttcca
841 cagggatgga aagggtcacc agcaatattc cagagtagca tgacaaaaat cttagagccc
901 tttagaacaa aaaatccaga actggtcatc tatcaatatg tagatgactt gtatgtaggc
961 tctgacttag aaataggaca acatagagca aaaatagaag agctaagaga acatctattg
1021 aaatggggat ttaccacacc agacaagaaa catcagaaag aacccccatt tctttggatg
1081 gggtatgaac tccatcctga caaatggaca gtacagccta tacagctgcc agaaaaggat
1141 agctggactg tcaatgacat acagaa
//
last modified: Tue May 31 10:56 2022