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LOCUS	    JN638117		    1166 bp    DNA     linear	VRL 26-SEP-2011
DEFINITION  HIV-1 isolate A197 from South Africa pol protein (pol) and gag
	    protein (gag) genes, partial cds
ACCESSION   JN638117
VERSION     JN638117.1 GI:346420575
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1166)
            Show all sequences for reference 1
  AUTHORS   van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
  TITLE     Antiretroviral resistance patterns and factors associated with
	    resistance in adult patients failing NNRTI-based regimens in the
	    western cape, South Africa
  JOURNAL   J. Med. Virol. 83 (10), 1764-1769 (2011)
  PUBMED    21837793
REFERENCE   2 (bases 1 to 1166)
            Show all sequences for reference 2
  AUTHORS   van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2011) Division of Medical Virology, Stellenbosch
	    University, Francie van Zijl Drive, Parow 7500, South Africa
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence name A197 Patient sex Female
	    Patient age 29 Patient comment d4T 3TC NVP CD4 count 193 Viral Load
	    4800 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..1166
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="A197"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="04-Sep-2008"
     gene	     <1..>1166
		     /gene="pol"
     CDS	     <1..>1166
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEO24073.1"
		     /db_xref="GI:346420577"
		     /translation="RANSPTSRELQVRGDNPRSEAGAERQGTLNFPQITLWQRPLVTI
		     KIGGQLKEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKVRQYDEIPIEICGKKA
		     IGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEK
		     IKALTAICEEMEKEGKITKIGPENPYNTPIFAIKKKDSTKWRKLVDFRELNKRTQDFW
		     EVQLGIPHPAGLKKNKSVTILDVGDAYFSVPLDENFRKYTAFTIPSTNNETPGIRYQY
		     NVLPQGWKGSPAIFQSSMTKILEPFRTKNPELVIYQYVDDLYVGSDLEIGQHRAKIEE
		     LREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQ"
     gene	     <1..133
		     /gene="gag"
     CDS	     <1..133
		     /gene="gag"
		     /codon_start="2"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AEO24072.1"
		     /db_xref="GI:346420576"
		     /translation="EPTAPPAESFRFEETTPAQKQEPKDREPLTSLKSLFGSDPLLQ"
BASE COUNT	456 a	 211 c	  245 g    254 t
ORIGIN
       1 agagccaaca gccccaccag cagagagctt caggttcgag gagacaaccc ccgctcagaa 
      61 gcaggagccg aaagacaggg aacccttaac ttccctcaaa tcactctttg gcagcgaccc 
     121 cttgttacaa taaaaatagg gggccaacta aaggaggctc tcttagatac aggagcagat 
     181 gatacagtat tagaagaaat aaatttgcca ggaaaatgga aaccaaaaat gataggggga 
     241 attggaggtt ttatcaaagt aagacaatat gatgaaatac ctatagaaat ttgtggaaaa 
     301 aaggctatag gtacagtgtt agtgggacct acacctgtca acataattgg aagaaacttg 
     361 ttgactcagc ttggatgcac actaaatttt ccaattagtc ccattgaaac tgtaccagta 
     421 aaactgaagc caggaatgga tggcccaaag gttaaacaat ggccattgac agaagaaaaa 
     481 ataaaagcat taacagcaat ttgtgaagag atggaaaagg aaggaaaaat tacaaaaatt 
     541 gggcctgaaa atccatataa cactccaata tttgccataa aaaagaaaga cagtactaaa 
     601 tggagaaaat tagtagattt cagggaactc aataaaagaa ctcaagactt ttgggaagtt 
     661 caattaggaa taccacatcc ggcagggtta aaaaagaaca aatcagtaac aatactggat 
     721 gtgggggatg catatttttc agttccttta gatgagaatt tcaggaaata tactgcattc 
     781 accataccta gtacaaacaa tgaaacacca gggattagat atcaatataa tgtgcttcca 
     841 cagggatgga aagggtcacc agcaatattc cagagtagca tgacaaaaat cttagagccc 
     901 tttagaacaa aaaatccaga actggtcatc tatcaatatg tagatgactt gtatgtaggc 
     961 tctgacttag aaataggaca acatagagca aaaatagaag agctaagaga acatctattg 
    1021 aaatggggat ttaccacacc agacaagaaa catcagaaag aacccccatt tctttggatg 
    1081 gggtatgaac tccatcctga caaatggaca gtacagccta tacagctgcc agaaaaggat 
    1141 agctggactg tcaatgacat acagaa
//
last modified: Tue May 31 10:56 2022


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