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LOCUS	    JN638101		    1173 bp    DNA     linear	VRL 26-SEP-2011
DEFINITION  HIV-1 isolate A172 from South Africa pol protein (pol) and gag
	    protein (gag) genes, partial cds
ACCESSION   JN638101
VERSION     JN638101.1 GI:346420530
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1173)
            Show all sequences for reference 1
  AUTHORS   van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
  TITLE     Antiretroviral resistance patterns and factors associated with
	    resistance in adult patients failing NNRTI-based regimens in the
	    western cape, South Africa
  JOURNAL   J. Med. Virol. 83 (10), 1764-1769 (2011)
  PUBMED    21837793
REFERENCE   2 (bases 1 to 1173)
            Show all sequences for reference 2
  AUTHORS   van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2011) Division of Medical Virology, Stellenbosch
	    University, Francie van Zijl Drive, Parow 7500, South Africa
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence name A172 Patient sex Female
	    Patient age 31 Patient comment d4T 3TC NVP CD4 count 424 Viral Load
	    440000 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..1173
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="A172"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="06-Aug-2008"
     gene	     <1..>1173
		     /gene="pol"
     CDS	     <1..>1173
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEO24044.1"
		     /db_xref="GI:346420532"
		     /translation="ANSPTRANSPTSRELQVRGDNPRAKAGQGTLNFPQITLWQRPLV
		     TIXVGGQMKEALLDTGADDTVLEEIBLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGK
		     KAIGTVLVGPTPINIIGRNMLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTE
		     EKIKALTAICEEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQD
		     FWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVPLDENFRKYTAFTIPSINNETPGKRY
		     QYNVLPQGWKGSPAIFQSSMTKILEPFRVKNPDLVIYQYVDDLYVGSDLEIGQHREKI
		     EELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPILLPEKDSWTVNDIQK"
     gene	     <1..139
		     /gene="gag"
     CDS	     <1..139
		     /gene="gag"
		     /codon_start="2"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AEO24043.1"
		     /db_xref="GI:346420531"
		     /translation="PTAPPEPTAPPAESFRFEETTPVPKQDREPLTSLKSLFGNDPLL
		     Q"
BASE COUNT	452 a	 208 c	  251 g    260 t      2 other
ORIGIN
       1 gccaacagcc ccaccagagc caacagcccc accagcagag agcttcaggt tcgaggagac 
      61 aacccccgtg ccaaagcagg acagggaacc cttaacttcc ctcaaatcac tctttggcaa 
     121 cgaccccttg ttacaataar agtagggggc caaatgaagg aggctctctt agatacagga 
     181 gcagatgata cagtattaga agaaatarat ttgccaggaa aatggaaacc aaaaatgata 
     241 ggaggaattg gaggttttat caaagtaaga cagtatgatc aaatacctat agaaatttgt 
     301 gggaaaaagg ctataggtac agtattagta gggcctacac cgatcaacat aattggaaga 
     361 aatatgttga ctcagcttgg atgtacacta aattttccaa ttagtcccat tgaaactgta 
     421 ccagtaaaat taaaaccagg aatggatggc ccaaaggtca aacaatggcc attgacagaa 
     481 gagaaaataa aagcattaac agcaatttgt gaagaaatgg aaaaggaagg gaaaattaca 
     541 aaaattgggc ctgaaaatcc atataacact ccagtatttg ccataaaaaa gaaggacagt 
     601 actaagtgga gaaaattagt agatttcagg gaactcaata aaagaactca agacttttgg 
     661 gaagttcaat taggaatacc acacccagca gggttaaaaa agaacaaatc agtgacagtg 
     721 ctagatgtgg gggatgcata tttttcagtt cctttagatg agaattttag aaagtacact 
     781 gcattcacca tacctagtat aaataatgaa acaccaggga aaaggtatca atataatgtg 
     841 ctgccacagg gatggaaagg atcaccagca atattccaga gtagcatgac aaaaatctta 
     901 gagcccttta gagtaaaaaa tccagactta gttatctatc aatatgtgga tgacttgtat 
     961 gtaggatctg atttagaaat agggcagcat agagaaaaaa tagaggagtt aagggaacat 
    1021 ttgttaaaat ggggatttac cacaccagac aagaaacatc aaaaagaacc cccatttctt 
    1081 tggatggggt atgaactcca tcctgacaaa tggacagtac aacctatact gcttccagaa 
    1141 aaggatagct ggactgtcaa tgacatacag aag
//
last modified: Tue May 31 10:56 2022


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