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LOCUS JN638101 1173 bp DNA linear VRL 26-SEP-2011
DEFINITION HIV-1 isolate A172 from South Africa pol protein (pol) and gag
protein (gag) genes, partial cds
ACCESSION JN638101
VERSION JN638101.1 GI:346420530
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1173)
Show all sequences for reference 1
AUTHORS van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
TITLE Antiretroviral resistance patterns and factors associated with
resistance in adult patients failing NNRTI-based regimens in the
western cape, South Africa
JOURNAL J. Med. Virol. 83 (10), 1764-1769 (2011)
PUBMED 21837793
REFERENCE 2 (bases 1 to 1173)
Show all sequences for reference 2
AUTHORS van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2011) Division of Medical Virology, Stellenbosch
University, Francie van Zijl Drive, Parow 7500, South Africa
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence name A172 Patient sex Female
Patient age 31 Patient comment d4T 3TC NVP CD4 count 424 Viral Load
440000 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..1173
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="A172"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="06-Aug-2008"
gene <1..>1173
/gene="pol"
CDS <1..>1173
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEO24044.1"
/db_xref="GI:346420532"
/translation="ANSPTRANSPTSRELQVRGDNPRAKAGQGTLNFPQITLWQRPLV
TIXVGGQMKEALLDTGADDTVLEEIBLPGKWKPKMIGGIGGFIKVRQYDQIPIEICGK
KAIGTVLVGPTPINIIGRNMLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTE
EKIKALTAICEEMEKEGKITKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQD
FWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVPLDENFRKYTAFTIPSINNETPGKRY
QYNVLPQGWKGSPAIFQSSMTKILEPFRVKNPDLVIYQYVDDLYVGSDLEIGQHREKI
EELREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPILLPEKDSWTVNDIQK"
gene <1..139
/gene="gag"
CDS <1..139
/gene="gag"
/codon_start="2"
/transl_table="1"
/product="gag protein"
/protein_id="AEO24043.1"
/db_xref="GI:346420531"
/translation="PTAPPEPTAPPAESFRFEETTPVPKQDREPLTSLKSLFGNDPLL
Q"
BASE COUNT 452 a 208 c 251 g 260 t 2 other
ORIGIN
1 gccaacagcc ccaccagagc caacagcccc accagcagag agcttcaggt tcgaggagac
61 aacccccgtg ccaaagcagg acagggaacc cttaacttcc ctcaaatcac tctttggcaa
121 cgaccccttg ttacaataar agtagggggc caaatgaagg aggctctctt agatacagga
181 gcagatgata cagtattaga agaaatarat ttgccaggaa aatggaaacc aaaaatgata
241 ggaggaattg gaggttttat caaagtaaga cagtatgatc aaatacctat agaaatttgt
301 gggaaaaagg ctataggtac agtattagta gggcctacac cgatcaacat aattggaaga
361 aatatgttga ctcagcttgg atgtacacta aattttccaa ttagtcccat tgaaactgta
421 ccagtaaaat taaaaccagg aatggatggc ccaaaggtca aacaatggcc attgacagaa
481 gagaaaataa aagcattaac agcaatttgt gaagaaatgg aaaaggaagg gaaaattaca
541 aaaattgggc ctgaaaatcc atataacact ccagtatttg ccataaaaaa gaaggacagt
601 actaagtgga gaaaattagt agatttcagg gaactcaata aaagaactca agacttttgg
661 gaagttcaat taggaatacc acacccagca gggttaaaaa agaacaaatc agtgacagtg
721 ctagatgtgg gggatgcata tttttcagtt cctttagatg agaattttag aaagtacact
781 gcattcacca tacctagtat aaataatgaa acaccaggga aaaggtatca atataatgtg
841 ctgccacagg gatggaaagg atcaccagca atattccaga gtagcatgac aaaaatctta
901 gagcccttta gagtaaaaaa tccagactta gttatctatc aatatgtgga tgacttgtat
961 gtaggatctg atttagaaat agggcagcat agagaaaaaa tagaggagtt aagggaacat
1021 ttgttaaaat ggggatttac cacaccagac aagaaacatc aaaaagaacc cccatttctt
1081 tggatggggt atgaactcca tcctgacaaa tggacagtac aacctatact gcttccagaa
1141 aaggatagct ggactgtcaa tgacatacag aag
//
last modified: Tue May 31 10:56 2022