View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS JN638096 1165 bp DNA linear VRL 26-SEP-2011
DEFINITION HIV-1 isolate A166 from South Africa pol protein (pol) and gag
protein (gag) genes, partial cds
ACCESSION JN638096
VERSION JN638096.1 GI:346420516
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1165)
Show all sequences for reference 1
AUTHORS van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
TITLE Antiretroviral resistance patterns and factors associated with
resistance in adult patients failing NNRTI-based regimens in the
western cape, South Africa
JOURNAL J. Med. Virol. 83 (10), 1764-1769 (2011)
PUBMED 21837793
REFERENCE 2 (bases 1 to 1165)
Show all sequences for reference 2
AUTHORS van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2011) Division of Medical Virology, Stellenbosch
University, Francie van Zijl Drive, Parow 7500, South Africa
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence name A166 Patient sex Female
Patient age 29 Patient comment AZT 3TC NVP CD4 count 314 Viral Load
1800 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..1165
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="A166"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="21-May-2008"
gene <1..>1165
/gene="pol"
CDS <1..>1165
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEO24035.1"
/db_xref="GI:346420518"
/translation="RANSPTSRELSVRGDDPCSEAGAERQGTLNFPQITLWQRPLVSI
KVGGQIKEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKVRQYEQITLEICGKKA
IGTVLVGPTPVNIIGRNMLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEK
IKALXAICEEMEKEGKITKIGPDNPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFW
EVQLGIPHPAGLKKNKSVTILDVGDAYFSVPLDENFRKYTAFTIPSINNETPGIRYQY
NVLPQGWKGSPAIFQSSMTKILEPFRVRNPEIVIYQYVDDLYVGSDLEIGQHRAKIEE
LREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTIQPIKLPEKDSWTVNDIQ"
gene <1..133
/gene="gag"
CDS <1..133
/gene="gag"
/codon_start="2"
/transl_table="1"
/product="gag protein"
/protein_id="AEO24034.1"
/db_xref="GI:346420517"
/translation="EPTAPPAESFRCEETTPAPKQEPKDREPLISLKSLFGSDPLSQ"
BASE COUNT 448 a 206 c 254 g 256 t 1 other
ORIGIN
1 agagccaaca gccccaccag cagagagctt tcggtgcgag gagacgaccc ctgctccgaa
61 gcaggagccg aaagacaggg aacccttaat ttccctcaaa tcactctttg gcagcgaccc
121 cttgtctcaa taaaagtagg gggacagata aaggaggctc tcttagacac aggagcagat
181 gatacagtat tagaagaaat aaatttgcca ggaaaatgga aaccaaaaat gataggagga
241 attggaggtt ttatcaaagt aagacaatat gaacaaataa ctctagaaat ttgtggaaaa
301 aaggctatag gtacagtatt agtaggacct acacctgtca acataattgg aagaaacatg
361 ttgactcagc ttggatgcac actaaatttt ccaattagtc ccattgaaac tgtaccagta
421 aaattaaagc caggaatgga tggcccaaag gttaaacaat ggccattgac agaagagaaa
481 ataaaggcat tawcagcaat ttgtgaagaa atggagaagg aaggaaaaat tacaaaaatt
541 gggcctgata atccatataa cactccagta tttgctataa aaaagaagga cagtactaag
601 tggagaaaat tagtagattt cagggaactc aataaaagaa ctcaagactt ttgggaggtt
661 caattaggaa taccacaccc agcaggatta aaaaagaaca agtcagtgac aatattggat
721 gtgggggatg catatttttc agttccttta gatgaaaact tcaggaagta tactgcattc
781 accataccta gtataaacaa tgagacacca gggattagat atcagtataa tgtgcttcca
841 cagggatgga aaggatcacc agcaatattc cagagtagca tgacaaaaat cctagagccc
901 tttagggtaa gaaacccaga aatagtcatc tatcaatacg tagatgactt gtatgtagga
961 tctgacttag aaatagggca acatagagca aagatagaag agttaagaga acatttatta
1021 agatggggat ttaccacacc agacaagaaa catcagaaag aacccccatt tctttggatg
1081 gggtatgaac tccatcctga caaatggaca atacagccta taaagctacc agagaaggat
1141 agctggactg tcaatgacat acaga
//
last modified: Tue May 31 10:56 2022