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LOCUS	    JN638096		    1165 bp    DNA     linear	VRL 26-SEP-2011
DEFINITION  HIV-1 isolate A166 from South Africa pol protein (pol) and gag
	    protein (gag) genes, partial cds
ACCESSION   JN638096
VERSION     JN638096.1 GI:346420516
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1165)
            Show all sequences for reference 1
  AUTHORS   van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
  TITLE     Antiretroviral resistance patterns and factors associated with
	    resistance in adult patients failing NNRTI-based regimens in the
	    western cape, South Africa
  JOURNAL   J. Med. Virol. 83 (10), 1764-1769 (2011)
  PUBMED    21837793
REFERENCE   2 (bases 1 to 1165)
            Show all sequences for reference 2
  AUTHORS   van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2011) Division of Medical Virology, Stellenbosch
	    University, Francie van Zijl Drive, Parow 7500, South Africa
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence name A166 Patient sex Female
	    Patient age 29 Patient comment AZT 3TC NVP CD4 count 314 Viral Load
	    1800 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..1165
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="A166"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="21-May-2008"
     gene	     <1..>1165
		     /gene="pol"
     CDS	     <1..>1165
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEO24035.1"
		     /db_xref="GI:346420518"
		     /translation="RANSPTSRELSVRGDDPCSEAGAERQGTLNFPQITLWQRPLVSI
		     KVGGQIKEALLDTGADDTVLEEINLPGKWKPKMIGGIGGFIKVRQYEQITLEICGKKA
		     IGTVLVGPTPVNIIGRNMLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEK
		     IKALXAICEEMEKEGKITKIGPDNPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFW
		     EVQLGIPHPAGLKKNKSVTILDVGDAYFSVPLDENFRKYTAFTIPSINNETPGIRYQY
		     NVLPQGWKGSPAIFQSSMTKILEPFRVRNPEIVIYQYVDDLYVGSDLEIGQHRAKIEE
		     LREHLLRWGFTTPDKKHQKEPPFLWMGYELHPDKWTIQPIKLPEKDSWTVNDIQ"
     gene	     <1..133
		     /gene="gag"
     CDS	     <1..133
		     /gene="gag"
		     /codon_start="2"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="AEO24034.1"
		     /db_xref="GI:346420517"
		     /translation="EPTAPPAESFRCEETTPAPKQEPKDREPLISLKSLFGSDPLSQ"
BASE COUNT	448 a	 206 c	  254 g    256 t      1 other
ORIGIN
       1 agagccaaca gccccaccag cagagagctt tcggtgcgag gagacgaccc ctgctccgaa 
      61 gcaggagccg aaagacaggg aacccttaat ttccctcaaa tcactctttg gcagcgaccc 
     121 cttgtctcaa taaaagtagg gggacagata aaggaggctc tcttagacac aggagcagat 
     181 gatacagtat tagaagaaat aaatttgcca ggaaaatgga aaccaaaaat gataggagga 
     241 attggaggtt ttatcaaagt aagacaatat gaacaaataa ctctagaaat ttgtggaaaa 
     301 aaggctatag gtacagtatt agtaggacct acacctgtca acataattgg aagaaacatg 
     361 ttgactcagc ttggatgcac actaaatttt ccaattagtc ccattgaaac tgtaccagta 
     421 aaattaaagc caggaatgga tggcccaaag gttaaacaat ggccattgac agaagagaaa 
     481 ataaaggcat tawcagcaat ttgtgaagaa atggagaagg aaggaaaaat tacaaaaatt 
     541 gggcctgata atccatataa cactccagta tttgctataa aaaagaagga cagtactaag 
     601 tggagaaaat tagtagattt cagggaactc aataaaagaa ctcaagactt ttgggaggtt 
     661 caattaggaa taccacaccc agcaggatta aaaaagaaca agtcagtgac aatattggat 
     721 gtgggggatg catatttttc agttccttta gatgaaaact tcaggaagta tactgcattc 
     781 accataccta gtataaacaa tgagacacca gggattagat atcagtataa tgtgcttcca 
     841 cagggatgga aaggatcacc agcaatattc cagagtagca tgacaaaaat cctagagccc 
     901 tttagggtaa gaaacccaga aatagtcatc tatcaatacg tagatgactt gtatgtagga 
     961 tctgacttag aaatagggca acatagagca aagatagaag agttaagaga acatttatta 
    1021 agatggggat ttaccacacc agacaagaaa catcagaaag aacccccatt tctttggatg 
    1081 gggtatgaac tccatcctga caaatggaca atacagccta taaagctacc agagaaggat 
    1141 agctggactg tcaatgacat acaga
//
last modified: Tue May 31 10:56 2022


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