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LOCUS	    JN638089		     992 bp    DNA     linear	VRL 26-SEP-2011
DEFINITION  HIV-1 isolate A151 from South Africa pol protein (pol) gene,
	    partial cds
ACCESSION   JN638089
VERSION     JN638089.1 GI:346420496
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 992)
            Show all sequences for reference 1
  AUTHORS   van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
  TITLE     Antiretroviral resistance patterns and factors associated with
	    resistance in adult patients failing NNRTI-based regimens in the
	    western cape, South Africa
  JOURNAL   J. Med. Virol. 83 (10), 1764-1769 (2011)
  PUBMED    21837793
REFERENCE   2 (bases 1 to 992)
            Show all sequences for reference 2
  AUTHORS   van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-AUG-2011) Division of Medical Virology, Stellenbosch
	    University, Francie van Zijl Drive, Parow 7500, South Africa
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence name A151 Patient sex Male
	    Patient age 42 Patient comment d4T 3TC NVP CD4 count 356 Viral Load
	    6400 ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..992
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="A151"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="26-Jun-2008"
     gene	     <1..>992
		     /gene="pol"
     CDS	     <1..>992
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEO24021.1"
		     /db_xref="GI:346420497"
		     /translation="ADDTVLEEIDLPGKWKPKMIGGIGGFIKVRQYDQISIEICGKKA
		     IGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEK
		     IKALTAICEEMEKEGKITKIGPDNPYNTPVFAIKKKDSNKWRKLVDFRELNKRTQDFW
		     EVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDENFRKYTAFTIPSINNETPGIRYQY
		     NVLPQGWKGSPTIFQSSMTKILEPFRAQNPDIVICQYVDDLYVGSDLEIGQHRAKIEE
		     LREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQ"
BASE COUNT	399 a	 154 c	  207 g    229 t      3 other
ORIGIN
       1 gcagatgata cagtattaga agaaatagat ttgccaggaa aatggaaacc aaaaatgata 
      61 gggggaattg gaggttttat caaagtaaga cagtatgatc aaatatctat agaaatttgt 
     121 gggaaaaaag ctataggtac agtattagta gggcctacac cggtcaacat aattggaaga 
     181 aatctgttga ctcagcttgg atgcacacta aattttccaa ttagycctat tgaaactgta 
     241 ccagtaaaat taaaaccagg aatggatggc ccaaaggtca aacaatggcc attgacagaa 
     301 gaaaaaataa aagcattaac agcaatttgt gaagaaatgg agaaggaagg aaaaattaca 
     361 aaaattgggc ctgacaatcc atataacact ccagtatttg ctataaaaaa gaaggacagt 
     421 aataagtgga gaaaattagt agatttcagg gaacttaata aaagaactca agacttttgg 
     481 gaagttcaat taggaatacc acacccagca gggttaaaaa agaaaaaatc agtaacagtg 
     541 ctagatgtgg gggatgcata tttttcagtt ccgttagatg aaaacttcag gaaatatact 
     601 gcattcacca tacctagtat aaacaatgaa acaccaggga ttagatatca atataatgtg 
     661 ctaccacagg gatggaaagg atcaccaaca atattccaga gtagcatgac aaaaatctta 
     721 gaaccyttta gagcacaaaa tccagacata gttatctgtc aatatgtgga tgacttgtat 
     781 gtaggatctg acttagaaat agggcaacat agagcaaaaa tagargagtt aagggaacat 
     841 ttattgaaat ggggatttac cacaccagac aagaaacatc aaaaggaacc cccatttctt 
     901 tggatggggt atgaactcca tcctgacaaa tggacagtac agcctataca gctgccagaa 
     961 aaggatagct ggactgtcaa tgacatacag aa
//
last modified: Tue May 31 10:56 2022


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