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LOCUS JN638089 992 bp DNA linear VRL 26-SEP-2011
DEFINITION HIV-1 isolate A151 from South Africa pol protein (pol) gene,
partial cds
ACCESSION JN638089
VERSION JN638089.1 GI:346420496
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 992)
Show all sequences for reference 1
AUTHORS van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
TITLE Antiretroviral resistance patterns and factors associated with
resistance in adult patients failing NNRTI-based regimens in the
western cape, South Africa
JOURNAL J. Med. Virol. 83 (10), 1764-1769 (2011)
PUBMED 21837793
REFERENCE 2 (bases 1 to 992)
Show all sequences for reference 2
AUTHORS van Zyl,G., Van der Merwe,L., Claassen,M., Zeier,M. and Preiser,W.
TITLE Direct Submission
JOURNAL Submitted (29-AUG-2011) Division of Medical Virology, Stellenbosch
University, Francie van Zijl Drive, Parow 7500, South Africa
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence name A151 Patient sex Male
Patient age 42 Patient comment d4T 3TC NVP CD4 count 356 Viral Load
6400 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..992
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="A151"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="26-Jun-2008"
gene <1..>992
/gene="pol"
CDS <1..>992
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEO24021.1"
/db_xref="GI:346420497"
/translation="ADDTVLEEIDLPGKWKPKMIGGIGGFIKVRQYDQISIEICGKKA
IGTVLVGPTPVNIIGRNLLTQLGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEK
IKALTAICEEMEKEGKITKIGPDNPYNTPVFAIKKKDSNKWRKLVDFRELNKRTQDFW
EVQLGIPHPAGLKKKKSVTVLDVGDAYFSVPLDENFRKYTAFTIPSINNETPGIRYQY
NVLPQGWKGSPTIFQSSMTKILEPFRAQNPDIVICQYVDDLYVGSDLEIGQHRAKIEE
LREHLLKWGFTTPDKKHQKEPPFLWMGYELHPDKWTVQPIQLPEKDSWTVNDIQ"
BASE COUNT 399 a 154 c 207 g 229 t 3 other
ORIGIN
1 gcagatgata cagtattaga agaaatagat ttgccaggaa aatggaaacc aaaaatgata
61 gggggaattg gaggttttat caaagtaaga cagtatgatc aaatatctat agaaatttgt
121 gggaaaaaag ctataggtac agtattagta gggcctacac cggtcaacat aattggaaga
181 aatctgttga ctcagcttgg atgcacacta aattttccaa ttagycctat tgaaactgta
241 ccagtaaaat taaaaccagg aatggatggc ccaaaggtca aacaatggcc attgacagaa
301 gaaaaaataa aagcattaac agcaatttgt gaagaaatgg agaaggaagg aaaaattaca
361 aaaattgggc ctgacaatcc atataacact ccagtatttg ctataaaaaa gaaggacagt
421 aataagtgga gaaaattagt agatttcagg gaacttaata aaagaactca agacttttgg
481 gaagttcaat taggaatacc acacccagca gggttaaaaa agaaaaaatc agtaacagtg
541 ctagatgtgg gggatgcata tttttcagtt ccgttagatg aaaacttcag gaaatatact
601 gcattcacca tacctagtat aaacaatgaa acaccaggga ttagatatca atataatgtg
661 ctaccacagg gatggaaagg atcaccaaca atattccaga gtagcatgac aaaaatctta
721 gaaccyttta gagcacaaaa tccagacata gttatctgtc aatatgtgga tgacttgtat
781 gtaggatctg acttagaaat agggcaacat agagcaaaaa tagargagtt aagggaacat
841 ttattgaaat ggggatttac cacaccagac aagaaacatc aaaaggaacc cccatttctt
901 tggatggggt atgaactcca tcctgacaaa tggacagtac agcctataca gctgccagaa
961 aaggatagct ggactgtcaa tgacatacag aa
//
last modified: Tue May 31 10:56 2022