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LOCUS	    JN562816		    2568 bp    RNA     linear	VRL 24-OCT-2011
DEFINITION  HIV-1 isolate 7115_P17_(1) from USA envelope glycoprotein (env)
	    gene, complete cds
ACCESSION   JN562816
VERSION     JN562816.1 GI:353257341
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2568)
            Show all sequences for reference 1
  AUTHORS   Schnell,G., Joseph,S., Spudich,S., Price,R.W. and Swanstrom,R.
  TITLE     HIV-1 replication in the central nervous system occurs in two
	    distinct cell types.
  JOURNAL   PLoS. Pathog.. 7(10); e1002286 (2011)
  PUBMED    22007152
REFERENCE   2 (bases 1 to 2568)
            Show all sequences for reference 2
  AUTHORS   Schnell,G., Joseph,S., Spudich,S., Price,R.W. and Swanstrom,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-AUG-2011) Microbiology and Immunology, University of
	    North Carolina at Chapel Hill, Chapel Hill, NC 27599-7295, USA
FEATURES             Location/Qualifiers
     source	     1..2568
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="7115_P17_(1)"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="11-May-2004"
     gene	     1..2568
		     /gene="env"
     CDS	     1..2568
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AEQ76000.1"
		     /db_xref="GI:353257342"
		     /translation="MRVMEIKRNYQHLWRGGTLLLGILMICSAAEDLWVTVYYGVPVW
		     KEATTTLFCASDAKAYNTEAHNVWATHACVPTDPNPQEVTLVNVTEDFNMWKNNMVEQ
		     MHEDIISLWDESLKPCVKLTPLCVTLNCTDWKGNTTTPTTATSGNGTMMEGGEMKNCS
		     FNITSGIRDKRQKDYAFFYKLDLVKIDDSDNTSYRLISCNTSVITQACPKTSFEPIPI
		     HYCAPAGFAILKCKDKKFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIR
		     SENITDNAKTIIVQLNETVEINCTRPNNNTRRSIHIGPGRAFYGTDIIGNIRQAHCNI
		     SSTQWNNTLQRIVENLREIDQFKSKTIVFNQSSGGDPEIVMHTFNCGGEFFYCNSTGL
		     FNSTWYENGTWTGTEGSNDTITLPCRIKQIINMWQEVGKAMYAPPIQGQIRCSSNITG
		     LLLTRDGGADNSTPETFRPGGGNMKDNWRSELYKYKVVQIEPLGLAPTRARRRVVQRE
		     KRAVGIGALFIGFLGAAGSTMGAASVTLTVQARTLLSGIVQQQSNLLRAIEAQQHLLQ
		     LTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTNVPWNASWSNKSMDEIWEN
		     MTWMQWEKEIDNYTDLIYNLIEKSQNQQEKNEQELLALDKWASLWNWFNISNWLWYIK
		     IFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRLPAQRGPDRPGGIEEEGGDRD
		     RDRSGHLVDGFLAIFWVDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEILKYWWNL
		     LQYWSQELKSSAVNLLNTTAIAVAEGTDRVIEIAQGAFRAILHIPTRIRQGLERALL"
BASE COUNT	875 a	 454 c	  619 g    620 t
ORIGIN
       1 atgagagtga tggagatcaa gaggaattat cagcacttgt ggagaggggg caccttgctc 
      61 cttgggatat tgatgatctg tagtgctgca gaagacttgt gggtcacagt ctactatggg 
     121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcatat 
     181 aatacagagg cgcataatgt ttgggccacg catgcctgtg tacccacaga ccccaaccca 
     241 caagaagtaa cattggtaaa tgtaacagaa gattttaaca tgtggaaaaa taatatggta 
     301 gaacagatgc atgaggatat aatcagttta tgggatgaaa gcctaaagcc atgtgtaaaa 
     361 ttaaccccac tctgtgttac tctaaattgc actgattgga aagggaatac cactacccct 
     421 actactgcca ccagtggtaa tgggacaatg atggagggag gagaaatgaa aaactgctct 
     481 ttcaatataa cctcaggcat aagagataag aggcagaagg actatgcatt cttttataaa 
     541 cttgatttag taaaaataga tgatagcgat aatactagtt ataggttgat aagttgtaac 
     601 acctcagtca tcacacaggc ctgtccaaag acatcctttg agccaattcc aatacattat 
     661 tgtgccccgg ctggttttgc gattctaaag tgtaaggata agaagtttaa tggaacagga 
     721 ccatgtaaaa atgtcagcac agtgcaatgt acacatggaa ttagaccagt agtatcaact 
     781 caactgctgt taaatggcag tctagcagaa gaagagatag taattagatc tgaaaatatc 
     841 acagacaatg ctaagaccat aatagtacag ctgaacgaaa cagtagaaat taattgtaca 
     901 agacccaaca acaatacaag aagaagtata catataggac cagggagagc attttatgga 
     961 acagatataa taggaaacat aagacaagca cattgtaaca tcagtagtac acaatggaat 
    1021 aacactttac agcgaatagt tgaaaattta agagaaattg accagtttaa gagtaaaaca 
    1081 atagtcttta atcaatcctc aggaggggac ccagaaattg taatgcacac ttttaattgt 
    1141 ggaggggaat ttttctactg taattcaaca ggactattta atagtacttg gtatgagaat 
    1201 gggacctgga cgggtactga agggtcaaat gacactatta cactcccatg cagaataaaa 
    1261 caaatcataa acatgtggca ggaagtagga aaagcaatgt atgcccctcc catccaagga 
    1321 caaattagat gttcatcaaa tattacaggg ctgctcttaa caagagatgg tggtgctgat 
    1381 aatagcaccc ccgagacctt cagacctgga ggaggaaata tgaaggacaa ttggagaagt 
    1441 gaattatata aatataaagt agtacaaatt gaaccattag gattagcgcc caccagggca 
    1501 aggagaagag tggtgcagag agaaaaaaga gcagtgggaa taggagcgtt gttcattggg 
    1561 ttcttgggag cagcaggaag cactatgggc gcagcgtcag tgacgctgac ggtacaggcc 
    1621 agaacactat tgtctggtat agtgcaacag caaagcaact tgctgagggc tattgaggcg 
    1681 caacagcatc tgttgcaact cacagtctgg ggcatcaagc agctccaagc aagagtcctg 
    1741 gctgtagaaa gatacctaag agatcaacag ctcctgggga tttggggttg ctctggaaaa 
    1801 ctcatctgca ccactaatgt gccttggaat gctagttgga gcaataaatc tatggatgag 
    1861 atttgggaga acatgacctg gatgcagtgg gagaaagaaa ttgacaatta cacagactta 
    1921 atatacaact taattgaaaa atcgcagaac cagcaagaaa agaatgaaca agaattattg 
    1981 gcattagata aatgggcaag tttgtggaat tggtttaaca tatcaaattg gctgtggtat 
    2041 ataaaaatat tcataatgat agtaggaggc ttaataggtt taagaatagt ttttactgta 
    2101 ctttctatag tgaatagagt taggcaggga tactcaccat tatcgtttca gacccgcctc 
    2161 ccagcccaga ggggacccga caggcccgga ggaatcgaag aagaaggtgg agacagagac 
    2221 agagacagat ccggtcactt agtggatgga ttcttagcaa ttttctgggt cgacctgcgg 
    2281 agcctgttcc tcttcagcta ccaccgcttg agagacttac tcttgattgc agcgaggatt 
    2341 gtggaacttc tgggacgcag ggggtgggag attctcaaat attggtggaa cctcctccag 
    2401 tattggagtc aggaactaaa gagtagtgct gttaacttgc ttaatactac agccatagca 
    2461 gtagctgagg ggacagacag ggttatagaa atagcacaag gagcttttag agctattctc 
    2521 cacataccta caagaattag acagggcctt gaaagggctt tgctataa
//
last modified: Tue May 31 10:56 2022


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