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LOCUS JN562816 2568 bp RNA linear VRL 24-OCT-2011
DEFINITION HIV-1 isolate 7115_P17_(1) from USA envelope glycoprotein (env)
gene, complete cds
ACCESSION JN562816
VERSION JN562816.1 GI:353257341
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2568)
Show all sequences for reference 1
AUTHORS Schnell,G., Joseph,S., Spudich,S., Price,R.W. and Swanstrom,R.
TITLE HIV-1 replication in the central nervous system occurs in two
distinct cell types.
JOURNAL PLoS. Pathog.. 7(10); e1002286 (2011)
PUBMED 22007152
REFERENCE 2 (bases 1 to 2568)
Show all sequences for reference 2
AUTHORS Schnell,G., Joseph,S., Spudich,S., Price,R.W. and Swanstrom,R.
TITLE Direct Submission
JOURNAL Submitted (08-AUG-2011) Microbiology and Immunology, University of
North Carolina at Chapel Hill, Chapel Hill, NC 27599-7295, USA
FEATURES Location/Qualifiers
source 1..2568
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="7115_P17_(1)"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="11-May-2004"
gene 1..2568
/gene="env"
CDS 1..2568
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEQ76000.1"
/db_xref="GI:353257342"
/translation="MRVMEIKRNYQHLWRGGTLLLGILMICSAAEDLWVTVYYGVPVW
KEATTTLFCASDAKAYNTEAHNVWATHACVPTDPNPQEVTLVNVTEDFNMWKNNMVEQ
MHEDIISLWDESLKPCVKLTPLCVTLNCTDWKGNTTTPTTATSGNGTMMEGGEMKNCS
FNITSGIRDKRQKDYAFFYKLDLVKIDDSDNTSYRLISCNTSVITQACPKTSFEPIPI
HYCAPAGFAILKCKDKKFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIR
SENITDNAKTIIVQLNETVEINCTRPNNNTRRSIHIGPGRAFYGTDIIGNIRQAHCNI
SSTQWNNTLQRIVENLREIDQFKSKTIVFNQSSGGDPEIVMHTFNCGGEFFYCNSTGL
FNSTWYENGTWTGTEGSNDTITLPCRIKQIINMWQEVGKAMYAPPIQGQIRCSSNITG
LLLTRDGGADNSTPETFRPGGGNMKDNWRSELYKYKVVQIEPLGLAPTRARRRVVQRE
KRAVGIGALFIGFLGAAGSTMGAASVTLTVQARTLLSGIVQQQSNLLRAIEAQQHLLQ
LTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICTTNVPWNASWSNKSMDEIWEN
MTWMQWEKEIDNYTDLIYNLIEKSQNQQEKNEQELLALDKWASLWNWFNISNWLWYIK
IFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRLPAQRGPDRPGGIEEEGGDRD
RDRSGHLVDGFLAIFWVDLRSLFLFSYHRLRDLLLIAARIVELLGRRGWEILKYWWNL
LQYWSQELKSSAVNLLNTTAIAVAEGTDRVIEIAQGAFRAILHIPTRIRQGLERALL"
BASE COUNT 875 a 454 c 619 g 620 t
ORIGIN
1 atgagagtga tggagatcaa gaggaattat cagcacttgt ggagaggggg caccttgctc
61 cttgggatat tgatgatctg tagtgctgca gaagacttgt gggtcacagt ctactatggg
121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcatat
181 aatacagagg cgcataatgt ttgggccacg catgcctgtg tacccacaga ccccaaccca
241 caagaagtaa cattggtaaa tgtaacagaa gattttaaca tgtggaaaaa taatatggta
301 gaacagatgc atgaggatat aatcagttta tgggatgaaa gcctaaagcc atgtgtaaaa
361 ttaaccccac tctgtgttac tctaaattgc actgattgga aagggaatac cactacccct
421 actactgcca ccagtggtaa tgggacaatg atggagggag gagaaatgaa aaactgctct
481 ttcaatataa cctcaggcat aagagataag aggcagaagg actatgcatt cttttataaa
541 cttgatttag taaaaataga tgatagcgat aatactagtt ataggttgat aagttgtaac
601 acctcagtca tcacacaggc ctgtccaaag acatcctttg agccaattcc aatacattat
661 tgtgccccgg ctggttttgc gattctaaag tgtaaggata agaagtttaa tggaacagga
721 ccatgtaaaa atgtcagcac agtgcaatgt acacatggaa ttagaccagt agtatcaact
781 caactgctgt taaatggcag tctagcagaa gaagagatag taattagatc tgaaaatatc
841 acagacaatg ctaagaccat aatagtacag ctgaacgaaa cagtagaaat taattgtaca
901 agacccaaca acaatacaag aagaagtata catataggac cagggagagc attttatgga
961 acagatataa taggaaacat aagacaagca cattgtaaca tcagtagtac acaatggaat
1021 aacactttac agcgaatagt tgaaaattta agagaaattg accagtttaa gagtaaaaca
1081 atagtcttta atcaatcctc aggaggggac ccagaaattg taatgcacac ttttaattgt
1141 ggaggggaat ttttctactg taattcaaca ggactattta atagtacttg gtatgagaat
1201 gggacctgga cgggtactga agggtcaaat gacactatta cactcccatg cagaataaaa
1261 caaatcataa acatgtggca ggaagtagga aaagcaatgt atgcccctcc catccaagga
1321 caaattagat gttcatcaaa tattacaggg ctgctcttaa caagagatgg tggtgctgat
1381 aatagcaccc ccgagacctt cagacctgga ggaggaaata tgaaggacaa ttggagaagt
1441 gaattatata aatataaagt agtacaaatt gaaccattag gattagcgcc caccagggca
1501 aggagaagag tggtgcagag agaaaaaaga gcagtgggaa taggagcgtt gttcattggg
1561 ttcttgggag cagcaggaag cactatgggc gcagcgtcag tgacgctgac ggtacaggcc
1621 agaacactat tgtctggtat agtgcaacag caaagcaact tgctgagggc tattgaggcg
1681 caacagcatc tgttgcaact cacagtctgg ggcatcaagc agctccaagc aagagtcctg
1741 gctgtagaaa gatacctaag agatcaacag ctcctgggga tttggggttg ctctggaaaa
1801 ctcatctgca ccactaatgt gccttggaat gctagttgga gcaataaatc tatggatgag
1861 atttgggaga acatgacctg gatgcagtgg gagaaagaaa ttgacaatta cacagactta
1921 atatacaact taattgaaaa atcgcagaac cagcaagaaa agaatgaaca agaattattg
1981 gcattagata aatgggcaag tttgtggaat tggtttaaca tatcaaattg gctgtggtat
2041 ataaaaatat tcataatgat agtaggaggc ttaataggtt taagaatagt ttttactgta
2101 ctttctatag tgaatagagt taggcaggga tactcaccat tatcgtttca gacccgcctc
2161 ccagcccaga ggggacccga caggcccgga ggaatcgaag aagaaggtgg agacagagac
2221 agagacagat ccggtcactt agtggatgga ttcttagcaa ttttctgggt cgacctgcgg
2281 agcctgttcc tcttcagcta ccaccgcttg agagacttac tcttgattgc agcgaggatt
2341 gtggaacttc tgggacgcag ggggtgggag attctcaaat attggtggaa cctcctccag
2401 tattggagtc aggaactaaa gagtagtgct gttaacttgc ttaatactac agccatagca
2461 gtagctgagg ggacagacag ggttatagaa atagcacaag gagcttttag agctattctc
2521 cacataccta caagaattag acagggcctt gaaagggctt tgctataa
//
last modified: Tue May 31 10:56 2022