HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    JN562791		    2643 bp    RNA     linear	VRL 24-OCT-2011
DEFINITION  HIV-1 isolate 4013_P32 from USA envelope glycoprotein (env) gene,
	    complete cds
ACCESSION   JN562791
VERSION     JN562791.1 GI:353257291
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2643)
            Show all sequences for reference 1
  AUTHORS   Schnell,G., Joseph,S., Spudich,S., Price,R.W. and Swanstrom,R.
  TITLE     HIV-1 replication in the central nervous system occurs in two
	    distinct cell types.
  JOURNAL   PLoS. Pathog.. 7(10); e1002286 (2011)
  PUBMED    22007152
REFERENCE   2 (bases 1 to 2643)
            Show all sequences for reference 2
  AUTHORS   Schnell,G., Joseph,S., Spudich,S., Price,R.W. and Swanstrom,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-AUG-2011) Microbiology and Immunology, University of
	    North Carolina at Chapel Hill, Chapel Hill, NC 27599-7295, USA
FEATURES             Location/Qualifiers
     source	     1..2643
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="4013_P32"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="17-Nov-1997"
     gene	     1..2643
		     /gene="env"
     CDS	     1..2643
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AEQ75975.1"
		     /db_xref="GI:353257292"
		     /translation="MRVKEIRKNYQHLWTWGMMLLGTLMICKATEQLWVTVYYGVPVW
		     KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEILLVNVTEKFNMWKNNMVEQ
		     MHEDVISLWEQSLKPCVKLTPICVTLNCTDVNTNTTDGNSTVGNNTQATNNSSWGPIM
		     GNGELKNCSFNVTTDIRDKVKKERALFYSLDIVLIDDDNNNSTGRNNNNNSGKYRLRS
		     CNTSIITQACPKVTFEPIPIHYCAPAGFAILKCNDKNFNGSELCRNVSTVQCTHGIKP
		     VVSTQLLLNGSLAEDEIVIRSANLSENHKTIIVHLNESVEINCTRPNNNTRKSIPMGP
		     GRAFYATGDIIGNIRLAYCNLSRASWNKTLNQVAKKLREKFENKTIGFEPSSGGDPEI
		     VMHSFICGGEFFYCNTTQLFTWTWNGTKGDFTNGSNTNSTNITLPCRIKQIVNMWQEV
		     GKAMYAPPIRGLIRCSSNITGLLLTRDGGINNGTNNNDTEIFRPLGGNMRDNWRSELY
		     KYKVVEIEPLGIAPSRAKRRVVQREKRAITLGAMFLGFLGAAGSTMGAASMALTVQAR
		     QLLSGIVQQQNNLLKAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSG
		     KLICTTTVPWNASWSNKSHDEIWGNMTWMQWEKEIDNYTNLIYTLLVESQTQQEKNEQ
		     ELLALDKWASLWNWFDISNWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLS
		     FQIHPPAPRGPDRPDGTEEEGGERDRDRSGILVDGFLALFWTDLRSLFLFLYHRLRDF
		     LLIVARIVELLGRRGWEVLKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRIIEV
		     VQRACRAILNIPRRIRQGLERALI"
BASE COUNT	926 a	 449 c	  612 g    656 t
ORIGIN
       1 atgagagtga aggagatcag gaagaattat cagcacttgt ggacatgggg catgatgctc 
      61 cttgggacgt taatgatctg taaagctaca gaacaattgt gggtcacagt ctattatgga 
     121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcatat 
     181 gatacagagg tacacaatgt ctgggccaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaaatac tattggtaaa tgtgacagaa aaatttaaca tgtggaaaaa taacatggta 
     301 gaacagatgc atgaggatgt aatcagttta tgggaacaaa gcttaaagcc atgtgtaaaa 
     361 ttaaccccaa tctgtgttac tttaaattgc actgatgtga atactaatac tactgatggg 
     421 aactctactg ttgggaataa tactcaggcc actaataata gtagttgggg accgataatg 
     481 gggaatggag aactaaaaaa ttgctctttc aatgttacca cagacataag agataaggtg 
     541 aaaaaggaac gtgcactttt ttatagtctt gatatagtac taatagatga tgataataat 
     601 aatagtactg gtagaaataa taataataat agtggtaaat ataggttgag aagttgtaac 
     661 acctcaatca ttacacaagc ctgtccaaag gtaacctttg agccaattcc catacattat 
     721 tgtgccccgg ctggttttgc gattctaaaa tgtaatgata agaatttcaa tggatcagaa 
     781 ctatgtagaa atgtcagcac agtacaatgt acacatggaa ttaaaccagt agtgtcaact 
     841 caactgctgt taaatggcag tctagcagaa gacgagatag taattagatc tgccaattta 
     901 tcagaaaatc ataaaaccat aatagtacat ctgaatgagt ctgtagaaat taattgcaca 
     961 agacccaaca acaatacaag aaaaagtata cctatgggac cagggagagc attttatgca 
    1021 acaggagaca taataggaaa tataagacta gcatattgta accttagtag agcaagttgg 
    1081 aataaaactt taaaccaggt agctaaaaaa ttaagagaaa aatttgagaa taaaacaata 
    1141 ggctttgagc cttcatcagg aggggaccca gaaattgtaa tgcacagttt tatttgtgga 
    1201 ggggaattct tctactgtaa tacaacacaa ttgtttactt ggacttggaa tggtactaaa 
    1261 ggagatttta ctaacgggtc aaatacaaat agcacaaata ttacactccc atgcagaata 
    1321 aaacaaattg taaacatgtg gcaggaagta ggaaaagcaa tgtatgcccc tcctatcaga 
    1381 ggactaatta gatgttcatc aaatatcaca gggctgctac taacaagaga tggtggtata 
    1441 aataatggga ccaataacaa cgacactgag atcttcagac ctctaggagg aaatatgagg 
    1501 gacaattgga gaagtgaatt atataaatat aaagtagtag aaattgaacc attaggaata 
    1561 gcaccctcca gggcaaagag aagagtggtg cagagagaaa aaagagcaat aacactggga 
    1621 gctatgttcc ttgggttctt gggagcagca ggaagcacta tgggcgcagc gtcaatggcg 
    1681 ctgacggtac aggccagaca attattgtct ggtatagtgc aacagcagaa caatttgctg 
    1741 aaggctattg aggcgcagca gcacctgttg caactcacag tctggggcat caagcagctc 
    1801 caggcaagag tcctggctgt ggaaagatac ctaagggatc aacagctcct agggatttgg 
    1861 ggttgctctg gaaaactcat ttgcaccact actgtgcctt ggaatgctag ttggagtaat 
    1921 aaatcccacg atgagatttg gggtaacatg acctggatgc agtgggaaaa agaaattgac 
    1981 aattacacaa acttaatata caccttactt gtagaatcgc aaacccaaca agaaaagaat 
    2041 gaacaagaat tattggcatt ggataagtgg gcaagtttat ggaattggtt tgacatatca 
    2101 aactggctgt ggtatataaa aatattcata atgatagtag gaggcttgat aggtttaaga 
    2161 atagttttta ctgtactttc tatagtgaat agagttaggc agggatactc accattatca 
    2221 ttccagatcc accccccagc tccgagggga cccgacaggc cagacggaac agaagaagaa 
    2281 ggtggagaga gagacagaga cagatccgga atattagtgg atggattctt agcacttttc 
    2341 tggaccgacc tgaggagcct gttcctcttc ctctaccacc gcttgagaga ctttctcttg 
    2401 attgtagcga ggattgtgga acttctggga cgcagggggt gggaagtact caagtattgg 
    2461 tggaatctcc tacaatattg gagtcaggaa ctgaagaata gtgctgtcag cttgctcaac 
    2521 gccacagcta tagcagtagc tgaggggaca gataggatca tagaagtagt gcaaagagct 
    2581 tgtagagcta ttctcaacat acctagaaga ataagacagg gcttagaaag ggctttgata 
    2641 taa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.