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LOCUS JN562791 2643 bp RNA linear VRL 24-OCT-2011
DEFINITION HIV-1 isolate 4013_P32 from USA envelope glycoprotein (env) gene,
complete cds
ACCESSION JN562791
VERSION JN562791.1 GI:353257291
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2643)
Show all sequences for reference 1
AUTHORS Schnell,G., Joseph,S., Spudich,S., Price,R.W. and Swanstrom,R.
TITLE HIV-1 replication in the central nervous system occurs in two
distinct cell types.
JOURNAL PLoS. Pathog.. 7(10); e1002286 (2011)
PUBMED 22007152
REFERENCE 2 (bases 1 to 2643)
Show all sequences for reference 2
AUTHORS Schnell,G., Joseph,S., Spudich,S., Price,R.W. and Swanstrom,R.
TITLE Direct Submission
JOURNAL Submitted (08-AUG-2011) Microbiology and Immunology, University of
North Carolina at Chapel Hill, Chapel Hill, NC 27599-7295, USA
FEATURES Location/Qualifiers
source 1..2643
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="4013_P32"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="17-Nov-1997"
gene 1..2643
/gene="env"
CDS 1..2643
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEQ75975.1"
/db_xref="GI:353257292"
/translation="MRVKEIRKNYQHLWTWGMMLLGTLMICKATEQLWVTVYYGVPVW
KEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEILLVNVTEKFNMWKNNMVEQ
MHEDVISLWEQSLKPCVKLTPICVTLNCTDVNTNTTDGNSTVGNNTQATNNSSWGPIM
GNGELKNCSFNVTTDIRDKVKKERALFYSLDIVLIDDDNNNSTGRNNNNNSGKYRLRS
CNTSIITQACPKVTFEPIPIHYCAPAGFAILKCNDKNFNGSELCRNVSTVQCTHGIKP
VVSTQLLLNGSLAEDEIVIRSANLSENHKTIIVHLNESVEINCTRPNNNTRKSIPMGP
GRAFYATGDIIGNIRLAYCNLSRASWNKTLNQVAKKLREKFENKTIGFEPSSGGDPEI
VMHSFICGGEFFYCNTTQLFTWTWNGTKGDFTNGSNTNSTNITLPCRIKQIVNMWQEV
GKAMYAPPIRGLIRCSSNITGLLLTRDGGINNGTNNNDTEIFRPLGGNMRDNWRSELY
KYKVVEIEPLGIAPSRAKRRVVQREKRAITLGAMFLGFLGAAGSTMGAASMALTVQAR
QLLSGIVQQQNNLLKAIEAQQHLLQLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSG
KLICTTTVPWNASWSNKSHDEIWGNMTWMQWEKEIDNYTNLIYTLLVESQTQQEKNEQ
ELLALDKWASLWNWFDISNWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLS
FQIHPPAPRGPDRPDGTEEEGGERDRDRSGILVDGFLALFWTDLRSLFLFLYHRLRDF
LLIVARIVELLGRRGWEVLKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRIIEV
VQRACRAILNIPRRIRQGLERALI"
BASE COUNT 926 a 449 c 612 g 656 t
ORIGIN
1 atgagagtga aggagatcag gaagaattat cagcacttgt ggacatgggg catgatgctc
61 cttgggacgt taatgatctg taaagctaca gaacaattgt gggtcacagt ctattatgga
121 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcatat
181 gatacagagg tacacaatgt ctgggccaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatac tattggtaaa tgtgacagaa aaatttaaca tgtggaaaaa taacatggta
301 gaacagatgc atgaggatgt aatcagttta tgggaacaaa gcttaaagcc atgtgtaaaa
361 ttaaccccaa tctgtgttac tttaaattgc actgatgtga atactaatac tactgatggg
421 aactctactg ttgggaataa tactcaggcc actaataata gtagttgggg accgataatg
481 gggaatggag aactaaaaaa ttgctctttc aatgttacca cagacataag agataaggtg
541 aaaaaggaac gtgcactttt ttatagtctt gatatagtac taatagatga tgataataat
601 aatagtactg gtagaaataa taataataat agtggtaaat ataggttgag aagttgtaac
661 acctcaatca ttacacaagc ctgtccaaag gtaacctttg agccaattcc catacattat
721 tgtgccccgg ctggttttgc gattctaaaa tgtaatgata agaatttcaa tggatcagaa
781 ctatgtagaa atgtcagcac agtacaatgt acacatggaa ttaaaccagt agtgtcaact
841 caactgctgt taaatggcag tctagcagaa gacgagatag taattagatc tgccaattta
901 tcagaaaatc ataaaaccat aatagtacat ctgaatgagt ctgtagaaat taattgcaca
961 agacccaaca acaatacaag aaaaagtata cctatgggac cagggagagc attttatgca
1021 acaggagaca taataggaaa tataagacta gcatattgta accttagtag agcaagttgg
1081 aataaaactt taaaccaggt agctaaaaaa ttaagagaaa aatttgagaa taaaacaata
1141 ggctttgagc cttcatcagg aggggaccca gaaattgtaa tgcacagttt tatttgtgga
1201 ggggaattct tctactgtaa tacaacacaa ttgtttactt ggacttggaa tggtactaaa
1261 ggagatttta ctaacgggtc aaatacaaat agcacaaata ttacactccc atgcagaata
1321 aaacaaattg taaacatgtg gcaggaagta ggaaaagcaa tgtatgcccc tcctatcaga
1381 ggactaatta gatgttcatc aaatatcaca gggctgctac taacaagaga tggtggtata
1441 aataatggga ccaataacaa cgacactgag atcttcagac ctctaggagg aaatatgagg
1501 gacaattgga gaagtgaatt atataaatat aaagtagtag aaattgaacc attaggaata
1561 gcaccctcca gggcaaagag aagagtggtg cagagagaaa aaagagcaat aacactggga
1621 gctatgttcc ttgggttctt gggagcagca ggaagcacta tgggcgcagc gtcaatggcg
1681 ctgacggtac aggccagaca attattgtct ggtatagtgc aacagcagaa caatttgctg
1741 aaggctattg aggcgcagca gcacctgttg caactcacag tctggggcat caagcagctc
1801 caggcaagag tcctggctgt ggaaagatac ctaagggatc aacagctcct agggatttgg
1861 ggttgctctg gaaaactcat ttgcaccact actgtgcctt ggaatgctag ttggagtaat
1921 aaatcccacg atgagatttg gggtaacatg acctggatgc agtgggaaaa agaaattgac
1981 aattacacaa acttaatata caccttactt gtagaatcgc aaacccaaca agaaaagaat
2041 gaacaagaat tattggcatt ggataagtgg gcaagtttat ggaattggtt tgacatatca
2101 aactggctgt ggtatataaa aatattcata atgatagtag gaggcttgat aggtttaaga
2161 atagttttta ctgtactttc tatagtgaat agagttaggc agggatactc accattatca
2221 ttccagatcc accccccagc tccgagggga cccgacaggc cagacggaac agaagaagaa
2281 ggtggagaga gagacagaga cagatccgga atattagtgg atggattctt agcacttttc
2341 tggaccgacc tgaggagcct gttcctcttc ctctaccacc gcttgagaga ctttctcttg
2401 attgtagcga ggattgtgga acttctggga cgcagggggt gggaagtact caagtattgg
2461 tggaatctcc tacaatattg gagtcaggaa ctgaagaata gtgctgtcag cttgctcaac
2521 gccacagcta tagcagtagc tgaggggaca gataggatca tagaagtagt gcaaagagct
2581 tgtagagcta ttctcaacat acctagaaga ataagacagg gcttagaaag ggctttgata
2641 taa
//
last modified: Tue May 31 10:56 2022