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LOCUS JN393525 342 bp DNA linear VRL 06-AUG-2011
DEFINITION HIV-1 isolate LTS21_1989b from Malawi env glycoprotein (env) gene,
partial cds
ACCESSION JN393525
VERSION JN393525.1 GI:342209970
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 342)
Show all sequences for reference 1
AUTHORS Seager,I., Leeson,M.D., Crampin,A.C., Mulawa,D., French,N.,
Glynn,J.R., Travers,S.A.A. and McCormack,G.P.
TITLE HIV type 1 mutational patterns in HIV type 1 subtype C-infected
long-term survivors in Karonga District Malawi: further analysis
and correction.
JOURNAL AIDS Res. Hum. Retroviruses. 28(3); 308-13 (2012)
PUBMED 21702696
REFERENCE 2 (bases 1 to 342)
Show all sequences for reference 2
AUTHORS Seager,I., Leeson,M., Crampin,A.C., Mulawa,D., French,N.,
Glynn,J.R., Travers,S.A. and McCormack,G.P.
TITLE Direct Submission
JOURNAL Submitted (24-JUL-2011) Zoology, National University of Ireland
Galway, Martin Ryan Institute, Galway, Ireland
FEATURES Location/Qualifiers
source 1..342
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="LTS21_1989b"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Malawi"
/collection_date="1989"
gene <1..>342
/gene="env"
/note="C2-V3"
CDS <1..>342
/gene="env"
/note="C2-V3"
/codon_start="1"
/transl_table="1"
/product="env glycoprotein"
/protein_id="AEL16996.1"
/db_xref="GI:342209971"
/translation="NVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIGSENLTNNAKTI
IVHLNESVEIVCTRPNNNTRKSMRIGPGQTFYATGDIIGDIRQAHCNISKDKWDKTLH
RVSEKLKEHFHN"
BASE COUNT 152 a 49 c 63 g 78 t
ORIGIN
1 aatgtcagca cagtacaatg tacacatgga attaagccag tggtatcaac tcaactactg
61 ttaaatggta gcttagcaga agaagagata ataattggat ctgaaaatct gacaaacaat
121 gccaaaacaa taatagtaca tcttaatgaa tctgtagaga ttgtgtgtac aagacccaac
181 aataatacaa gaaaaagtat gaggatagga ccaggacaaa cattctatgc aacaggagac
241 ataataggag atataagaca agcacattgt aacattagta aagataaatg ggataaaact
301 ttacataggg taagtgaaaa attaaaagaa cacttccata at
//
last modified: Tue May 31 10:56 2022