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LOCUS	    JN393525		     342 bp    DNA     linear	VRL 06-AUG-2011
DEFINITION  HIV-1 isolate LTS21_1989b from Malawi env glycoprotein (env) gene,
	    partial cds
ACCESSION   JN393525
VERSION     JN393525.1 GI:342209970
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 342)
            Show all sequences for reference 1
  AUTHORS   Seager,I., Leeson,M.D., Crampin,A.C., Mulawa,D., French,N.,
	    Glynn,J.R., Travers,S.A.A. and McCormack,G.P.
  TITLE     HIV type 1 mutational patterns in HIV type 1 subtype C-infected
	    long-term survivors in Karonga District Malawi: further analysis
	    and correction.
  JOURNAL   AIDS Res. Hum. Retroviruses. 28(3); 308-13 (2012)
  PUBMED    21702696
REFERENCE   2 (bases 1 to 342)
            Show all sequences for reference 2
  AUTHORS   Seager,I., Leeson,M., Crampin,A.C., Mulawa,D., French,N.,
	    Glynn,J.R., Travers,S.A. and McCormack,G.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUL-2011) Zoology, National University of Ireland
	    Galway, Martin Ryan Institute, Galway, Ireland
FEATURES             Location/Qualifiers
     source	     1..342
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="LTS21_1989b"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /collection_date="1989"
     gene	     <1..>342
		     /gene="env"
		     /note="C2-V3"
     CDS	     <1..>342
		     /gene="env"
		     /note="C2-V3"
		     /codon_start="1"
		     /transl_table="1"
		     /product="env glycoprotein"
		     /protein_id="AEL16996.1"
		     /db_xref="GI:342209971"
		     /translation="NVSTVQCTHGIKPVVSTQLLLNGSLAEEEIIIGSENLTNNAKTI
		     IVHLNESVEIVCTRPNNNTRKSMRIGPGQTFYATGDIIGDIRQAHCNISKDKWDKTLH
		     RVSEKLKEHFHN"
BASE COUNT	152 a	  49 c	   63 g     78 t
ORIGIN
       1 aatgtcagca cagtacaatg tacacatgga attaagccag tggtatcaac tcaactactg 
      61 ttaaatggta gcttagcaga agaagagata ataattggat ctgaaaatct gacaaacaat 
     121 gccaaaacaa taatagtaca tcttaatgaa tctgtagaga ttgtgtgtac aagacccaac 
     181 aataatacaa gaaaaagtat gaggatagga ccaggacaaa cattctatgc aacaggagac 
     241 ataataggag atataagaca agcacattgt aacattagta aagataaatg ggataaaact 
     301 ttacataggg taagtgaaaa attaaaagaa cacttccata at
//
last modified: Tue May 31 10:56 2022


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