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LOCUS JN314957 1302 bp RNA linear VRL 27-JUL-2012
DEFINITION HIV-1 isolate IN-NARI-4-076 from India pol protein (pol) gene,
partial cds
ACCESSION JN314957
VERSION JN314957.1 GI:392312494
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Hingankar,N.K., Thorat,S.R., Deshpande,A., Rajasekaran,S.,
Chandrasekar,C., Kumar,S., Srikantiah,P., Chaturbhuj,D.N.,
Datkar,S.R., Deshmukh,P.S., Kulkarni,S.S., Sane,S., Reddy,D.C.,
Garg,R., Jordan,M.R., Kabra,S., Tripathy,S.P. and Paranjape,R.S.
TITLE Initial virologic response and HIV drug resistance among
HIV-infected individuals initiating first-line antiretroviral
therapy at 2 clinics in Chennai and Mumbai, India
JOURNAL Clin. Infect. Dis. 54, S348-S354 (2012)
PUBMED 22544202
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Hingankar,N.K., Thorat,S.R., Chaturbhuj,D.N., Tripathy,S.P.,
Rajasekaran,S., Srikantiah,P., Chandrasekar,C., J,S.K.,
Datkar,S.R., Deshmukh,P.S., Kulkarni,S., Sane,S., Reddy,D.C.S.,
Garg,R., Jordan,M.R., Kabra,S. and Paranjape,R.S.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2011) Drug Resistance Lab, Department of
Molecular Virology, National AIDS Research Institute, (Indian
Council of Medical Research), Plot 73, ''G'' Block, M.I.D.C.,
Bhosari, Pune, Maharashtra 411026, India
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="IN-NARI-4-076"
/isolation_source="HIV-1 infected male starting first-line
ART (baseline)"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="India"
/collection_date="10-Apr-2008"
/note="subtype: C"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AFM56192.1"
/db_xref="GI:392312495"
/translation="PQITLWQRPLVTIXVEGQIKEALLDTGADDTVLEEINLPGKWKP
XMIGGIGGFIKVRQYDQITIEICGKKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKEGKITKIGPENPYNTPXF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LHEDFRKYTAFTIPSVNNEXPGIRYQYNVLPQGWKGSPAIFQXSMTKILEPFRXQNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIRVRQLCKLLRGAKALTDIV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT 508 a 213 c 271 g 285 t 25 other
ORIGIN
1 cctcaaatca ctctttggca gcgaccccta gtyacaataa ragtagaggg ccaaataaaa
61 gaggctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgccaggr
121 aaatggaaac caaraatgat aggaggaatt ggaggtttta tcaargtaag acaatatgat
181 caaataacta tagaaatttg tggaaaaaag gctataggta cagtattagt aggaccyaca
241 cctgtcaaca taattggaag aaatctgttg actcagcttg gatgcacact aaattttcca
301 attagcccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcgttaa cagcaatttg tgatgaaatg
421 garaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccartattt
481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagatttttg ggaagtccaa ttaggaatac cacacccagc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat atttttcagt acctttacat
661 gaagacttca ggaaatatac tgcattcacc atacctagtg taaacaatga arcaccaggg
721 attagatatc aatayaatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 krtagcatga caaaaatctt agagccyttt aggrcacaaa atccagaaat agtcatctat
841 caatatatgg atgacttgta tgtaggatct gatttagaaa tagggcaaca tagagcaaaa
901 atagargaat taagagaaca tctgttragg tggggrttta ccacaccaga caagaarcat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagccyatac agytrccaga aaaggatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccagggatta gagtaaggca actttgyaaa
1141 ctccttaggg gggccaaagc mctaacagac atagtrccac taactgaaga agcagaatta
1201 gaattggcag agaacaggga aattctaaaa gaaccagtac atggagtata ttatgaccca
1261 tcaaaagayt tgatagctga aatacagaaa cagggacagg ac
//
last modified: Tue May 31 10:56 2022