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LOCUS	    JN314957		    1302 bp    RNA     linear	VRL 27-JUL-2012
DEFINITION  HIV-1 isolate IN-NARI-4-076 from India pol protein (pol) gene,
	    partial cds
ACCESSION   JN314957
VERSION     JN314957.1 GI:392312494
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Hingankar,N.K., Thorat,S.R., Deshpande,A., Rajasekaran,S.,
	    Chandrasekar,C., Kumar,S., Srikantiah,P., Chaturbhuj,D.N.,
	    Datkar,S.R., Deshmukh,P.S., Kulkarni,S.S., Sane,S., Reddy,D.C.,
	    Garg,R., Jordan,M.R., Kabra,S., Tripathy,S.P. and Paranjape,R.S.
  TITLE     Initial virologic response and HIV drug resistance among
	    HIV-infected individuals initiating first-line antiretroviral
	    therapy at 2 clinics in Chennai and Mumbai, India
  JOURNAL   Clin. Infect. Dis. 54, S348-S354 (2012)
  PUBMED    22544202
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Hingankar,N.K., Thorat,S.R., Chaturbhuj,D.N., Tripathy,S.P.,
	    Rajasekaran,S., Srikantiah,P., Chandrasekar,C., J,S.K.,
	    Datkar,S.R., Deshmukh,P.S., Kulkarni,S., Sane,S., Reddy,D.C.S.,
	    Garg,R., Jordan,M.R., Kabra,S. and Paranjape,R.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2011) Drug Resistance Lab, Department of
	    Molecular Virology, National AIDS Research Institute, (Indian
	    Council of Medical Research), Plot 73, ''G'' Block, M.I.D.C.,
	    Bhosari, Pune, Maharashtra 411026, India
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="IN-NARI-4-076"
		     /isolation_source="HIV-1 infected male starting first-line
		     ART (baseline)"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="India"
		     /collection_date="10-Apr-2008"
		     /note="subtype: C"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="contains protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AFM56192.1"
		     /db_xref="GI:392312495"
		     /translation="PQITLWQRPLVTIXVEGQIKEALLDTGADDTVLEEINLPGKWKP
		     XMIGGIGGFIKVRQYDQITIEICGKKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKEGKITKIGPENPYNTPXF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LHEDFRKYTAFTIPSVNNEXPGIRYQYNVLPQGWKGSPAIFQXSMTKILEPFRXQNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIRVRQLCKLLRGAKALTDIV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT	508 a	 213 c	  271 g    285 t     25 other
ORIGIN
       1 cctcaaatca ctctttggca gcgaccccta gtyacaataa ragtagaggg ccaaataaaa 
      61 gaggctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgccaggr 
     121 aaatggaaac caaraatgat aggaggaatt ggaggtttta tcaargtaag acaatatgat 
     181 caaataacta tagaaatttg tggaaaaaag gctataggta cagtattagt aggaccyaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagcttg gatgcacact aaattttcca 
     301 attagcccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcgttaa cagcaatttg tgatgaaatg 
     421 garaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccartattt 
     481 gccataaaaa agaaggacag tactaagtgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagatttttg ggaagtccaa ttaggaatac cacacccagc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggggatgcat atttttcagt acctttacat 
     661 gaagacttca ggaaatatac tgcattcacc atacctagtg taaacaatga arcaccaggg 
     721 attagatatc aatayaatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 krtagcatga caaaaatctt agagccyttt aggrcacaaa atccagaaat agtcatctat 
     841 caatatatgg atgacttgta tgtaggatct gatttagaaa tagggcaaca tagagcaaaa 
     901 atagargaat taagagaaca tctgttragg tggggrttta ccacaccaga caagaarcat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagccyatac agytrccaga aaaggatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccagggatta gagtaaggca actttgyaaa 
    1141 ctccttaggg gggccaaagc mctaacagac atagtrccac taactgaaga agcagaatta 
    1201 gaattggcag agaacaggga aattctaaaa gaaccagtac atggagtata ttatgaccca 
    1261 tcaaaagayt tgatagctga aatacagaaa cagggacagg ac
//
last modified: Tue May 31 10:56 2022


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