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LOCUS	    JN214947		    1268 bp    RNA     linear	VRL 07-DEC-2011
DEFINITION  HIV-1 isolate 479-7026-6 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   JN214947
VERSION     JN214947.1 GI:359302190
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1268)
            Show all sequences for reference 1
  AUTHORS   Delwart,E., Slikas,E., Stramer,S.L., Kamel,H., Kessler,D.,
	    Krysztof,D., Tobler,L.H., Carrick,D.M., Steele,W., Todd,D.,
	    Wright,D.J., Kleinman,S.H. and Busch,M.P.
  TITLE     Genetic Diversity of Recently Acquired and Prevalent HIV, Hepatitis
	    B Virus, and Hepatitis C Virus Infections in US Blood Donors.
  JOURNAL   J. Infect. Dis.. 205(6); 875-885 (2012)
  PUBMED    22293432
REFERENCE   2 (bases 1 to 1268)
            Show all sequences for reference 2
  AUTHORS   Slikas,E. and Delwart,E.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUL-2011) Health Studies, Westat, 1500 Research Blvd,
	    Rockville, MD 20850, USA
FEATURES             Location/Qualifiers
     source	     1..1268
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="479-7026-6"
		     /host="Homo sapiens; first time blood donor; age: 41;
		     race/ethnicity: not available; prevalent HIV infection"
		     /db_xref="taxon:11676"
		     /country="USA: West"
		     /collection_date="2008"
		     /PCR_primers="fwd_name: maw-26, fwd_seq:
		     ttggaaatgtggaaaggaaggac, fwd_name: pro-1, fwd_seq:
		     cagagccaacagccccacca, rev_name: rt21, rev_seq:
		     ctgtatttctgctattaagtcttttgatggg, rev_name: rt20, rev_seq:
		     ctgccagttctagctctgcttc"
		     /note="subtype: B"
     gene	     <1..>1268
		     /gene="pol"
     CDS	     <1..>1268
		     /gene="pol"
		     /note="drug resistant protease mutation: none; drug
		     resistant RT mutation none; may contain reverse
		     transcriptase, protease, and polymerase"
		     /codon_start="3"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEV22734.1"
		     /db_xref="GI:359302191"
		     /translation="GEPQGRDNNSLSEAGADRQGTVPLVFPQITLWQRPLVTIKIGGQ
		     LKEALLDTGADDTVLEEINLPGRWKPKMIGGIGGFIKVRQYDQIPIEICGHKAVGTVL
		     VGPTPVNIIGRNLLTQIGCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALV
		     EICTEMEKEGKISKIGPENPYNTPVFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLG
		     IPHPAGLKKKKSVTVLDVGDAYFSIPLDENFRKYTAFTIPSTNNEAPGIRYQYNVLPQ
		     GWKGSPAIFQSSMTKILEPFRKQNPDIVIYQYMDDLYVGSDVEIGEHRAKIEELRQHL
		     LRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWA
		     SQIYAGIKVKQLCKLLRGTKALTEVVQLTE"
BASE COUNT	489 a	 221 c	  276 g    282 t
ORIGIN
       1 gaggagagcc tcagggaaga gacaacaact ccctctcaga agcaggagcc gatagacaag 
      61 gaactgtacc ccttgtcttc cctcagatca ctctttggca acgacccctt gtcacaataa 
     121 agataggggg gcaactaaag gaagctctat tagatacagg agcagatgat acagtattag 
     181 aagaaataaa tttgccagga agatggaaac caaaaatgat agggggaatt ggaggtttta 
     241 tcaaagtaag acagtatgat cagataccca tagaaatctg tgggcacaaa gctgtaggta 
     301 cggtattagt aggacctaca cctgtcaaca taattggaag aaatctgttg actcagattg 
     361 gttgcacttt aaattttccc attagtccta ttgaaaccgt accagtaaaa ttaaagccag 
     421 gaatggatgg cccaaaagtc aaacaatggc cattaacaga agaaaaaata aaagcattag 
     481 tagaaatttg tacagaaatg gaaaaggaag ggaaaatttc aaaaataggg cctgaaaatc 
     541 catacaatac tccagtattt gctataaaga aaaaagacag tactaaatgg agaaaattag 
     601 tagatttcag agagcttaat aaaagaactc aagacttctg ggaagttcaa ttaggaatac 
     661 cacatccagc agggttaaaa aagaaaaaat cagtaacagt actggatgtg ggtgatgcgt 
     721 atttttcaat tcctctagat gaaaacttca ggaagtatac tgcatttacc atacccagta 
     781 caaacaatga ggcaccaggg attaggtatc agtacaatgt gctcccccaa ggatggaaag 
     841 ggtcaccagc aatattccaa agtagcatga caaaaatctt agagcctttt agaaaacaaa 
     901 atccagacat agttatctat caatacatgg atgatttata tgtaggatct gacgtagaaa 
     961 taggggagca tagagcaaaa atagaggagc tgagacaaca tctgttgagg tgggggttaa 
    1021 ccacaccaga caaaaaacat cagaaagaac ctccattcct ttggatgggt tatgaactcc 
    1081 atcctgataa atggacagta cagcctatag tactgccaga aaaagacagc tggactgtca 
    1141 atgacataca gaagttagtg ggaaaattga attgggcaag ccagatttac gcagggatta 
    1201 aggtaaagca attatgtaaa ctccttaggg gaaccaaagc actaacagaa gtagtacaac 
    1261 taacagaa
//
last modified: Tue May 31 10:56 2022


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