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LOCUS	    JN191691		    1296 bp    RNA     linear	VRL 02-NOV-2011
DEFINITION  HIV-1 isolate DUY1 from USA pol protein (pol) gene, partial cds
ACCESSION   JN191691
VERSION     JN191691.1 GI:354718444
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1296)
            Show all sequences for reference 1
  AUTHORS   Ellis,G.M., Huang,S., Hitti,J. and Frenkel,L.M.
  TITLE     Selection of HIV resistance associated with antiretroviral therapy
	    initiated due to pregnancy and suspended postpartum.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 58(3); 241-7 (2011)
  PUBMED    21765365
REFERENCE   2 (bases 1 to 1296)
            Show all sequences for reference 2
  AUTHORS   Ellis,G.M. and Frenkel,L.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2011) Infectious Diseases, Seattle Children''s
	    Research Institute, 1900 9th Avenue, MS C9S-8, Seattle, WA 98101,
	    USA
FEATURES             Location/Qualifiers
     source	     1..1296
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="DUY1"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="Aug-2003"
     gene	     <1..>1296
		     /gene="pol"
     CDS	     <1..>1296
		     /gene="pol"
		     /note="protease and reverse transcriptase"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AER38104.1"
		     /db_xref="GI:354718445"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEINLPGRWKP
		     KMIGGIGGFIKVRQYDQITVDICGHKAIGTVLVGPTPVNIIGRNLLTQJGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICXEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVI
		     PLTKEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQG"
BASE COUNT	510 a	 215 c	  279 g    290 t      2 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgccaggt 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataacag tagacatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagmttg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cactgacaga agaaaaaata aaagcattaa cagaaatttg trcagaaatg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gctataaaga agaaagacag tactaaatgg agaaagttag tagatttcag agaacttaac 
     541 aagaaaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagaattca ggaagtatac tgcatttacc atacctagca gaaacaatga gacaccaggg 
     721 attaggtatc agtacaacgt gctgccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agaacctttt agaaaacaaa atccagacat agttatctat 
     841 caatacatgg atgatctgta tgtagggtct gacttagaaa tagagcagca tagaacaaaa 
     901 atagaggaac tgagacagca tttgttgagg tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ccccattcct ttggatgggg tatgaactcc atcctgataa gtggacagta 
    1021 cagcctatag tgctaccaga aaaagacagc tggactgtta atgacataca gaagttagtg 
    1081 gggaaattga attgggcaag ccagatttat ccagggatta aagtaaggca attgtgcaaa 
    1141 ctccttaggg gaaccaaagc actgacagaa gtaataccac taacaaaaga agcagagtta 
    1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca 
    1261 tcaaaagact tagtagcaga aatacaaaag cagggg
//
last modified: Tue May 31 10:56 2022


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