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LOCUS JN191691 1296 bp RNA linear VRL 02-NOV-2011
DEFINITION HIV-1 isolate DUY1 from USA pol protein (pol) gene, partial cds
ACCESSION JN191691
VERSION JN191691.1 GI:354718444
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1296)
Show all sequences for reference 1
AUTHORS Ellis,G.M., Huang,S., Hitti,J. and Frenkel,L.M.
TITLE Selection of HIV resistance associated with antiretroviral therapy
initiated due to pregnancy and suspended postpartum.
JOURNAL J. Acquir. Immune Defic. Syndr.. 58(3); 241-7 (2011)
PUBMED 21765365
REFERENCE 2 (bases 1 to 1296)
Show all sequences for reference 2
AUTHORS Ellis,G.M. and Frenkel,L.M.
TITLE Direct Submission
JOURNAL Submitted (24-JUN-2011) Infectious Diseases, Seattle Children''s
Research Institute, 1900 9th Avenue, MS C9S-8, Seattle, WA 98101,
USA
FEATURES Location/Qualifiers
source 1..1296
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="DUY1"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="Aug-2003"
gene <1..>1296
/gene="pol"
CDS <1..>1296
/gene="pol"
/note="protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AER38104.1"
/db_xref="GI:354718445"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEINLPGRWKP
KMIGGIGGFIKVRQYDQITVDICGHKAIGTVLVGPTPVNIIGRNLLTQJGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICXEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKEFRKYTAFTIPSRNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKALTEVI
PLTKEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQG"
BASE COUNT 510 a 215 c 279 g 290 t 2 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgccaggt
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataacag tagacatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagmttg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cactgacaga agaaaaaata aaagcattaa cagaaatttg trcagaaatg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gctataaaga agaaagacag tactaaatgg agaaagttag tagatttcag agaacttaac
541 aagaaaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagaattca ggaagtatac tgcatttacc atacctagca gaaacaatga gacaccaggg
721 attaggtatc agtacaacgt gctgccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agaacctttt agaaaacaaa atccagacat agttatctat
841 caatacatgg atgatctgta tgtagggtct gacttagaaa tagagcagca tagaacaaaa
901 atagaggaac tgagacagca tttgttgagg tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ccccattcct ttggatgggg tatgaactcc atcctgataa gtggacagta
1021 cagcctatag tgctaccaga aaaagacagc tggactgtta atgacataca gaagttagtg
1081 gggaaattga attgggcaag ccagatttat ccagggatta aagtaaggca attgtgcaaa
1141 ctccttaggg gaaccaaagc actgacagaa gtaataccac taacaaaaga agcagagtta
1201 gaactggcag aaaacaggga aattctaaaa gaaccagtac atggagtgta ttatgaccca
1261 tcaaaagact tagtagcaga aatacaaaag cagggg
//
last modified: Tue May 31 10:56 2022