View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS JN153126 324 bp DNA linear VRL 10-AUG-2011
DEFINITION HIV-1 isolate E55MID14_CON_674_27 from Uganda envelope glycoprotein
gene, partial cds
ACCESSION JN153126
VERSION JN153126.1 GI:342890859
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 324)
Show all sequences for reference 1
AUTHORS Redd,A.D., Collinson-Streng,A., Martens,C., Ricklefs,S.,
Mullis,C.E., Manucci,J., Tobian,A.A., Selig,E.J., Laeyendecker,O.,
Sewankambo,N., Gray,R.H., Serwadda,D., Wawer,M.J., Porcella,S.F.
and Quinn,T.C.
TITLE Identification of HIV Superinfection in Seroconcordant Couples in
Rakai, Uganda, by Use of Next-Generation Deep Sequencing
JOURNAL J. Clin. Microbiol. 49 (8), 2859-2867 (2011)
PUBMED 21697329
REFERENCE 2 (bases 1 to 324)
Show all sequences for reference 2
AUTHORS Redd,A.D., Collinson-Streng,A., Martens,C., Ricklefs,S.,
Mullis,C.E., Manucci,J., Tobian,A.A.R., Selig,E.J.,
Laeyendecker,O., Sewankambo,N., Gray,R.H., Serwadda,D., Wawer,M.J.,
Porcella,S.F. and Quinn,T.C.
TITLE Direct Submission
JOURNAL Submitted (15-JUN-2011) School of Medicine, Johns Hopkins
University, Rangos Building, Room 530, 855 N Wolfe St, Baltimore,
MD 21205, USA
COMMENT ##Assembly-Data-START## Assembly Method GS Amplicon Variant
Analyzer version 2.5 (Roche) Sequencing Technology 454
##Assembly-Data-END##
FEATURES Location/Qualifiers
source 1..324
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="E55MID14_CON_674_27"
/host="Homo sapiens; male"
/db_xref="taxon:11676"
/country="Uganda: Rakai"
/collection_date="2005"
/note="couple 1"
CDS <1..>324
/note="gp41"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEL75267.1"
/db_xref="GI:342890860"
/translation="IKQLQTRILAVERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSN
KSQSDIWDNMTWMQWDREISNYTNIIYRLLEDSQNQQEKNEEDLLALDRWQNLWSWFN
ITNWLW"
BASE COUNT 110 a 54 c 80 g 80 t
ORIGIN
1 attaaacaac tccagacaag aatcctggct gtggaaagat acctaaggga tcaacagctc
61 ctagggattt ggggctgctc tggaaaactc atctgcacca ctgctgtgcc ttggaattct
121 agttggagta ataaatctca aagtgatatc tgggataaca tgacctggat gcagtgggat
181 agagaaatca gtaattatac aaatataata tacaggttgc ttgaggactc gcaaaaccag
241 caggaaaaga atgaagaaga tttactagca ttggacaggt ggcaaaatct gtggagttgg
301 tttaacataa caaattggct gtgg
//
last modified: Tue May 31 10:56 2022