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LOCUS	    JN153126		     324 bp    DNA     linear	VRL 10-AUG-2011
DEFINITION  HIV-1 isolate E55MID14_CON_674_27 from Uganda envelope glycoprotein
	    gene, partial cds
ACCESSION   JN153126
VERSION     JN153126.1 GI:342890859
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 324)
            Show all sequences for reference 1
  AUTHORS   Redd,A.D., Collinson-Streng,A., Martens,C., Ricklefs,S.,
	    Mullis,C.E., Manucci,J., Tobian,A.A., Selig,E.J., Laeyendecker,O.,
	    Sewankambo,N., Gray,R.H., Serwadda,D., Wawer,M.J., Porcella,S.F.
	    and Quinn,T.C.
  TITLE     Identification of HIV Superinfection in Seroconcordant Couples in
	    Rakai, Uganda, by Use of Next-Generation Deep Sequencing
  JOURNAL   J. Clin. Microbiol. 49 (8), 2859-2867 (2011)
  PUBMED    21697329
REFERENCE   2 (bases 1 to 324)
            Show all sequences for reference 2
  AUTHORS   Redd,A.D., Collinson-Streng,A., Martens,C., Ricklefs,S.,
	    Mullis,C.E., Manucci,J., Tobian,A.A.R., Selig,E.J.,
	    Laeyendecker,O., Sewankambo,N., Gray,R.H., Serwadda,D., Wawer,M.J.,
	    Porcella,S.F. and Quinn,T.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2011) School of Medicine, Johns Hopkins
	    University, Rangos Building, Room 530, 855 N Wolfe St, Baltimore,
	    MD 21205, USA
COMMENT     ##Assembly-Data-START## Assembly Method GS Amplicon Variant
	    Analyzer version 2.5 (Roche) Sequencing Technology 454
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..324
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="E55MID14_CON_674_27"
		     /host="Homo sapiens; male"
		     /db_xref="taxon:11676"
		     /country="Uganda: Rakai"
		     /collection_date="2005"
		     /note="couple 1"
     CDS	     <1..>324
		     /note="gp41"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AEL75267.1"
		     /db_xref="GI:342890860"
		     /translation="IKQLQTRILAVERYLRDQQLLGIWGCSGKLICTTAVPWNSSWSN
		     KSQSDIWDNMTWMQWDREISNYTNIIYRLLEDSQNQQEKNEEDLLALDRWQNLWSWFN
		     ITNWLW"
BASE COUNT	110 a	  54 c	   80 g     80 t
ORIGIN
       1 attaaacaac tccagacaag aatcctggct gtggaaagat acctaaggga tcaacagctc 
      61 ctagggattt ggggctgctc tggaaaactc atctgcacca ctgctgtgcc ttggaattct 
     121 agttggagta ataaatctca aagtgatatc tgggataaca tgacctggat gcagtgggat 
     181 agagaaatca gtaattatac aaatataata tacaggttgc ttgaggactc gcaaaaccag 
     241 caggaaaaga atgaagaaga tttactagca ttggacaggt ggcaaaatct gtggagttgg 
     301 tttaacataa caaattggct gtgg
//
last modified: Tue May 31 10:56 2022


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