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LOCUS	    JN153123		     323 bp    DNA     linear	VRL 10-AUG-2011
DEFINITION  HIV-1 isolate E55MID14_CON_211_33 from Uganda nonfunctional
	    envelope glycoprotein gene, partial sequence
ACCESSION   JN153123
VERSION     JN153123.1 GI:342890854
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 323)
            Show all sequences for reference 1
  AUTHORS   Redd,A.D., Collinson-Streng,A., Martens,C., Ricklefs,S.,
	    Mullis,C.E., Manucci,J., Tobian,A.A., Selig,E.J., Laeyendecker,O.,
	    Sewankambo,N., Gray,R.H., Serwadda,D., Wawer,M.J., Porcella,S.F.
	    and Quinn,T.C.
  TITLE     Identification of HIV Superinfection in Seroconcordant Couples in
	    Rakai, Uganda, by Use of Next-Generation Deep Sequencing
  JOURNAL   J. Clin. Microbiol. 49 (8), 2859-2867 (2011)
  PUBMED    21697329
REFERENCE   2 (bases 1 to 323)
            Show all sequences for reference 2
  AUTHORS   Redd,A.D., Collinson-Streng,A., Martens,C., Ricklefs,S.,
	    Mullis,C.E., Manucci,J., Tobian,A.A.R., Selig,E.J.,
	    Laeyendecker,O., Sewankambo,N., Gray,R.H., Serwadda,D., Wawer,M.J.,
	    Porcella,S.F. and Quinn,T.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-JUN-2011) School of Medicine, Johns Hopkins
	    University, Rangos Building, Room 530, 855 N Wolfe St, Baltimore,
	    MD 21205, USA
COMMENT     ##Assembly-Data-START## Assembly Method GS Amplicon Variant
	    Analyzer version 2.5 (Roche) Sequencing Technology 454
	    ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source	     1..323
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="E55MID14_CON_211_33"
		     /host="Homo sapiens; male"
		     /db_xref="taxon:11676"
		     /country="Uganda: Rakai"
		     /collection_date="2005"
		     /note="couple 1"
     misc_feature    <1..>323
		     /note="nonfunctional envelope glycoprotein due to
		     mutation; gp41"
BASE COUNT	111 a	  54 c	   78 g     80 t
ORIGIN
       1 attaaacagc tccagacaag aatcctggct gtggaaagat acctaaggga tcaacagctc 
      61 ctagggattt ggggctgctc tggaaaactc atctgcacca ctgctgtgcc ttggaattct 
     121 agttggagta ataaatctca aaatgatatc tgggataaca tgacctggat gcagtgggat 
     181 agagaaatca gtaattatac aaatataata tacaagttgc ttgaagactc gcaaaaccag 
     241 caggaaagaa tgaagaagat ttactagcat tggacaggtg gcaaaatctg tggagttggt 
     301 ttaacataac aaattggctg tgg
//
last modified: Tue May 31 10:56 2022


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