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LOCUS	    JN001034		    2725 bp    RNA     linear	VRL 06-JUL-2011
DEFINITION  Simian immunodeficiency virus clone AR73.P2G8 rev protein (rev)
	    gene, partial cds; and truncated envelope glycoprotein (rev) gene,
	    complete cds
ACCESSION   JN001034
VERSION     JN001034.1 GI:338969228
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2725)
            Show all sequences for reference 1
  AUTHORS   Bolton,D.L., Song,K., Wilson,R.L., Kozlowski,P.A., Tomaras,G.D.,
	    Keele,B.F., Lovingood,R.V., Rao,S. and Roederer,M.
  TITLE     Comparison of systemic and mucosal vaccination: impact on
	    intravenous and rectal SIV challenge.
  JOURNAL   Mucosal. Immunol.. 5(1); 41-52 (2012)
  PUBMED    22031182
REFERENCE   2 (bases 1 to 2725)
            Show all sequences for reference 2
  AUTHORS   Bolton,D.L., Song,K., Kozlowski,P., Keele,B.F., Lovingood,R.V.,
	    Rao,S. and Roederer,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2011) Vaccine Research Center, National
	    Institutes of Health, Bethesda, MD, USA
FEATURES             Location/Qualifiers
     source	     1..2725
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="SIVmac251"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /clone="AR73.P2G8"
		     /country="USA"
		     /collection_date="13-Apr-2010"
     gene	     <1..2541
		     /gene="rev"
     CDS	     join(<1..76,2288..2541)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AEJ33250.1"
		     /db_xref="GI:338969229"
		     /translation="MSSHEREEELRKRLRLIHLLHQTSKYPYPTGPGTANQRRQRRRR
		     WRKRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCGPTE
		     NSRSPQD"
     CDS	     77..310
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="truncated envelope glycoprotein"
		     /protein_id="AEJ33251.1"
		     /db_xref="GI:338969230"
		     /translation="MGCLGNQLLIAILLLSVYRIYCTQYVTVFYGVPAWRNATIPLFC
		     ATKNRDTWGTTQCLPDNGDYSELALNVTESFDA"
BASE COUNT	876 a	 516 c	  654 g    679 t
ORIGIN
       1 atgagcagtc acgaaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg 
      61 catcaaacaa gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt 
     121 aagtgtctat aggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg 
     181 gaggaatgcg acaattcccc tcttctgtgc aaccaagaat agggatactt ggggaacaac 
     241 tcagtgccta ccagataatg gtgattattc agaattggcc cttaatgtta cagaaagctt 
     301 tgatgcttag gagaatacag tcacagaaca ggcaatagag gatgtatggc aactctttga 
     361 gacctcaata aagccttgtg taaaattatc cccattatgc attactatga gatgcaataa 
     421 aagtgagaca gataaatggg gattgacaaa atcatcaaca ataacaacaa cagcaccaac 
     481 aacaccaaat acaacatcaa caaagtcaat agacatggtc aatgagacta gttcttgtat 
     541 agttcatgat aattgcacag gcttggaaca agagcaaatg ataggctgta aattcaacat 
     601 gacagggtta aaaagagaca agacaaagga gtacaatgaa acttggtact ctacagattt 
     661 ggtttgtgaa caagggaata gcactgataa tgaaagtaga tgttacatga atcactgtaa 
     721 cacttctatt atccaagagt cttgtgacaa gcattattgg gatactatta gatttaggta 
     781 ttgtgcacct ccaggttatg ctttgcttag atgtaatgac acaaattatt caggctttat 
     841 gcctaaatgt tctaaggtgg tggtctcttc atgcacaagg atgatggaga cacagacttc 
     901 tacttggttt ggctttaatg gaactagagc agaaaataga acttatattt actggcatgg 
     961 tagggataat aggactataa ttagtttaaa taagtattat aatctaacaa tgaaatgtag 
    1021 aagaccagga aataagacag ttttgccagt caccattatg tctggattgg ttttccactc 
    1081 acaaccagtc aatgagaggc caaaccaggc atggtgttgg tttggaggaa attggaagga 
    1141 tgcaataaaa gaggtgaagc agaccattgt caaacatccc aggtatactg gaattaacaa 
    1201 tactgataaa atcaatttga cggctcctag aggaggagat ccggaagtta ccttcatgtg 
    1261 gacaaattgc agaggagagt ttctctactg taaaatgaat tggtttctaa attgggtaga 
    1321 agatagggat gtaactaccc agaggccaaa ggaacggcat agaaggaatt acgtgccgtg 
    1381 tcatattaga caaataatca acacttggca taaagtaggc aaaaatgttt atttgcctcc 
    1441 aagagaggga gacctcacgt gtaactccac agtgaccagt ctcatagcaa acatagattg 
    1501 gactgatgga aaccaaacta atatcaccat gagtgcagag gtggcagaac tgtatcgatt 
    1561 ggagttggga gattataaat tagtagagat cactccgatt ggcttggccc ccacagatgt 
    1621 gaagaggtac actactggtg gcacctcaag aaataaaaga ggggtctttg tgctagggtt 
    1681 cttaggtttt ctcgcaacgg caggttctgc aatgggcgcg gcgtcgttga cgctgaccgc 
    1741 tcagtcccgg actttattgg ctgggatagt gcagcaacag caacagctgt tggacgtggt 
    1801 caagagacaa caagaattgt tgcgactgac cgtctgggga acaaagaacc tccagactag 
    1861 ggtcactgcc atcgagaagt acttaaagga ccaggcgcag ctgaatgctt gaggatgtgc 
    1921 atttagacaa gtctgccaca ctactgtacc atggccaaat gcaagtctaa caccaaattg 
    1981 gaacaatgat acttggcaag agtgggagcg aaaggttgac ttcttggagg aaaatataac 
    2041 agccctccta gaagaggcac aaattcaaca agagaagaac atgtatgaat tacaaaagtt 
    2101 gaatagctgg gatgtgtttg gcaattggtt tgaccttgct tcttggataa agtatataca 
    2161 atatggagtt tatatagttg taggagtaat actgttaaga atagtgatct atatagtaca 
    2221 aatgctagct aagttaaggc aagggtatag gccagtgttc tcttccccac cctcttattt 
    2281 ccagcagacc catatccaac aggacccggc actgccaacc agagaaggca aagaaggaga 
    2341 cggtggagaa agcggtggca acagctcctg gccttggcag atagaatata ttcatttcct 
    2401 gatccgccaa ctgatacgcc tcttgacttg gctattcagc aactgcagaa ccttgctatc 
    2461 gagagcatac cagatcctcc aaccaatact ccagaggctc tctgcggtcc tacggagaat 
    2521 tcgagaagtc ctcaggactg aactgaccta cctacaatat gggtggagct atttccagga 
    2581 ggcggtccaa gccggctgga gatctgcgac agagactctt gcgggcgcgt ggggagactt 
    2641 atgggaaact cttaggagag gtggaagatg gatcctcgca atccctagga ggattaggca 
    2701 agggcttgag ctcacgctct tgtga
//
last modified: Tue May 31 10:56 2022


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