HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    JN000947		    2725 bp    RNA     linear	VRL 06-JUL-2011
DEFINITION  Simian immunodeficiency virus clone 3C2.P3B7 rev protein (rev)
	    gene, partial cds; and envelope glycoprotein (env) gene, complete
	    cds
ACCESSION   JN000947
VERSION     JN000947.1 GI:338968967
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2725)
            Show all sequences for reference 1
  AUTHORS   Bolton,D.L., Song,K., Wilson,R.L., Kozlowski,P.A., Tomaras,G.D.,
	    Keele,B.F., Lovingood,R.V., Rao,S. and Roederer,M.
  TITLE     Comparison of systemic and mucosal vaccination: impact on
	    intravenous and rectal SIV challenge.
  JOURNAL   Mucosal. Immunol.. 5(1); 41-52 (2012)
  PUBMED    22031182
REFERENCE   2 (bases 1 to 2725)
            Show all sequences for reference 2
  AUTHORS   Bolton,D.L., Song,K., Kozlowski,P., Keele,B.F., Lovingood,R.V.,
	    Rao,S. and Roederer,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2011) Vaccine Research Center, National
	    Institutes of Health, Bethesda, MD, USA
FEATURES             Location/Qualifiers
     source	     1..2725
		     /organism="Simian immunodeficiency virus"
		     /mol_type="genomic RNA"
		     /isolate="SIVmac251"
		     /host="Macaca mulatta"
		     /db_xref="taxon:11723"
		     /clone="3C2.P3B7"
		     /country="USA"
		     /collection_date="13-Apr-2010"
     gene	     <1..2541
		     /gene="rev"
     CDS	     join(<1..76,2288..2541)
		     /gene="rev"
		     /codon_start="1"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="AEJ33076.1"
		     /db_xref="GI:338968968"
		     /translation="MSSHGREEELRKRLRLIHLLHQTSKYSYPTGPGTANQRRQRRRR
		     WRRRWQQLLALADRIYSFPDPPTDTPLDLAIQQLQNLAIESIPDPPTNTPEALCDPTK
		     DSRSPQD"
     gene	     77..2725
		     /gene="env"
     CDS	     77..2725
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AEJ33077.1"
		     /db_xref="GI:338968969"
		     /translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
		     ATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
		     KLSPLCITMRCNKSETDKWGLTKSSTITTTAPTTPNTTSTKSIDMVNETSSCIVHDNC
		     TGLEQEQMIGCKFNMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSI
		     IQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTST
		     WFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFH
		     SQPVNERPNQAWCWFGGNWKDAIKEVKQTIVKHPRYTGINNTDKINLTAPRGGDPEVT
		     FMWTNCRGEFLYCKMNWFLNWVEDRDVTTQRPKERHRRNYVPCHIRQIINTWHKVGKN
		     VYLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPI
		     GLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQ
		     QQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTV
		     PWPNASLTPNWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFG
		     NWFDLASWIKYIQYGVYVVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTHT
		     QQDPALPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRAY
		     QILQPILQRLSATLRRIREVLRTELTYLQYGWSYFHEAVQAGWRSATETLAGAWGDLW
		     ETLRRGGRWILAIPRRIRQGLELTLL"
BASE COUNT	867 a	 517 c	  662 g    679 t
ORIGIN
       1 atgagcagtc acggaagaga agaagaactc cgaaaaaggc taaggctaat acatcttctg 
      61 catcaaacaa gtaagtatgg gatgtcttgg gaatcagctg cttatcgcca tcttgctttt 
     121 aagtgtctat gggatctatt gtactcaata tgtcacagtc ttttatggtg taccagcttg 
     181 gaggaatgcg acaattcccc tcttctgtgc aaccaagaat agggatactt ggggaacaac 
     241 tcagtgccta ccagataatg gtgattattc agaattggcc cttaatgtta cagaaagctt 
     301 tgatgcttgg gagaatacag tcacagaaca ggcaatagag gatgtatggc aactctttga 
     361 gacctcaata aagccttgtg taaaattatc cccattatgc attactatga gatgcaataa 
     421 aagtgagaca gataaatggg gattgacaaa atcatcaaca ataacaacaa cagcaccaac 
     481 aacaccaaat acaacatcaa caaagtcaat agacatggtc aatgagacta gttcttgtat 
     541 agttcatgat aattgcacag gcttggaaca agagcaaatg ataggctgta aattcaacat 
     601 gacagggtta aaaagagaca agacaaagga gtacaatgaa acttggtact ctacagattt 
     661 ggtttgtgaa caagggaata gcactgataa tgaaagtaga tgttacatga atcactgtaa 
     721 cacttctatt atccaagagt cttgtgacaa gcattattgg gatactatta gatttaggta 
     781 ttgtgcacct ccaggttatg ctttgcttag atgtaatgac acaaattatt caggctttat 
     841 gcctaaatgt tctaaggtgg tggtctcttc atgcacaagg atgatggaga cacagacttc 
     901 tacttggttt ggctttaatg gaactagagc agaaaataga acttatattt actggcatgg 
     961 tagggataat aggactataa ttagtttaaa taagtattat aatctaacaa tgaaatgtag 
    1021 aagaccagga aataagacag ttttgccagt caccattatg tctggattgg ttttccactc 
    1081 acaaccagtc aatgagaggc caaaccaggc atggtgttgg tttggaggaa attggaagga 
    1141 tgcaataaaa gaggtgaagc agaccattgt caaacatccc aggtatactg gaattaacaa 
    1201 tactgataaa atcaatttga cggctcctag aggaggagat ccggaagtta ccttcatgtg 
    1261 gacaaattgc agaggagagt ttctctactg taaaatgaat tggtttctaa attgggtaga 
    1321 agatagggat gtaactaccc agaggccaaa ggaacggcat agaaggaatt acgtgccgtg 
    1381 tcatattaga caaataatca acacttggca taaagtaggc aaaaatgttt atttgcctcc 
    1441 aagagaggga gacctcacgt gtaactccac agtgaccagt ctcatagcaa acatagattg 
    1501 gactgatgga aaccaaacta atatcaccat gagtgcagag gtggcagaac tgtatcgatt 
    1561 ggagttggga gattataaat tagtagagat cactccgatt ggcttggccc ccacagatgt 
    1621 gaagaggtac actactggtg gcacctcaag aaataaaaga ggggtctttg tgctagggtt 
    1681 cttgggtttt ctcgcaacgg caggttctgc aatgggcgcg gcgtcgttga cgctgaccgc 
    1741 tcagtcccgg actttattgg ctgggatagt gcagcaacag caacagctgt tggacgtggt 
    1801 caagagacaa caagaattgt tgcgactgac cgtctgggga acaaagaacc tccagactag 
    1861 ggtcactgcc atcgagaagt acttaaagga ccaggcgcag ctgaatgctt ggggatgtgc 
    1921 gtttagacaa gtctgccaca ctactgtacc atggccaaat gcaagtctaa caccaaattg 
    1981 gaacaatgat acttggcaag agtgggagcg aaaggttgac ttcttggagg aaaatataac 
    2041 agccctccta gaagaggcac aaattcaaca agagaagaac atgtatgaat tacaaaagtt 
    2101 gaatagctgg gatgtgtttg gcaattggtt tgaccttgct tcttggataa agtatataca 
    2161 atatggagtt tatgtagttg taggagtaat actgttaaga atagtgatct atatagtaca 
    2221 aatgctagct aagttaaggc aggggtatag gccagtgttc tcttccccac cctcttattt 
    2281 ccagcagact catacccaac aggacccggc actgccaacc agagaaggca aagaaggaga 
    2341 cggtggagaa ggcggtggca acagctcctg gccttggcag atagaatata ttcatttcct 
    2401 gatccgccaa ctgatacgcc tcttgacttg gctattcagc aactgcagaa ccttgctatc 
    2461 gagagcatac cagatcctcc aaccaatact ccagaggctc tctgcgaccc tacgaaggat 
    2521 tcgagaagtc ctcaggactg aactgaccta cctacaatat gggtggagct atttccatga 
    2581 ggcggtccaa gccggctgga gatctgcgac agagactctt gcgggcgcgt ggggagactt 
    2641 atgggagact cttaggagag gtggaagatg gatcctcgca atccctagga ggattaggca 
    2701 agggcttgag ctcacgctct tgtga
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.