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LOCUS JF906592 1201 bp RNA linear VRL 14-SEP-2011
DEFINITION HIV-1 isolate BJ07238 from China pol protein (pol) and gag protein
(gag) genes, partial cds
ACCESSION JF906592
VERSION JF906592.1 GI:336359897
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1201)
Show all sequences for reference 1
AUTHORS Ye,J.R., Lu,H.Y., Wang,W.S., Guo,L., Xin,R.L., Yu,S.Q., Wu,T.C.,
Zeng,Y. and He,X.
TITLE The Prevalence of Drug Resistance Mutations Among Treatment-Naive
HIV-Infected Individuals in Beijing, China.
JOURNAL AIDS Res Hum Retroviruses. 2011 Aug 10.
PUBMED 21830915
REFERENCE 2 (bases 1 to 1201)
Show all sequences for reference 2
AUTHORS Ye,J.-R., Lu,H.-Y., Xin,R.-L., Yu,S.-Q., Wang,W.-S., He,X. and
Zeng,Y.
TITLE Direct Submission
JOURNAL Submitted (02-MAY-2011) National Institute for Viral Disease
Control and Prevention, China Center for Disease Prevention and
Control, Yingxin Street Xuan Wu District, Beijng 100052, China
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence Name BJ07238 Sample city Beijing
Culture method primary Sample tissue plasma Patient sex M Patient
age 34 Risk factor PB CD4 count 26 ##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..1201
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BJ07238"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="China"
/collection_date="01-Sep-2007"
/note="subtype: B"
gene <1..>1201
/gene="pol"
CDS <1..>1201
/gene="pol"
/codon_start="3"
/transl_table="1"
/product="pol protein"
/protein_id="AEI53705.1"
/db_xref="GI:336359899"
/translation="DLPQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRW
KPKMIGGIGGFIKVRQYDQIPIEICGHKAVGTVLIGPTPVNIIGRNLLTQLGCTLNFP
ISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTP
VFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFS
VPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQN
PDIVIYQYMDDLYVGSDLEIGQHRAKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYE
LHPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKELCKLLRGTKALTE
VIPLTEEA"
gene <1..48
/gene="gag"
CDS <1..48
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="AEI53704.1"
/db_xref="GI:336359898"
/translation="LTSLKSLFGNDPSSQ"
BASE COUNT 461 a 201 c 256 g 280 t 3 other
ORIGIN
1 ttgacctccc tcaaatcact ctttggcaac gacccctcgt cacaataaag ataggggggc
61 aattaaagga agctctatta gatacaggag cagatgatac agtattagaa gaaatgaatt
121 tgccaggaag atggaaacca aaaatgatag ggggaattgg aggttttatc aaagtaagac
181 agtatgatca gatacccata gaaatytgtg gacacaaggc tgtaggtaca gtattaatag
241 gacccacacc tgtcaacata attgggagaa atctgttgac tcagcttggt tgcactttaa
301 attttcctat tagtcctatt gaaactgtac cagtaaaatt aaagccagga atggatggcc
361 caaaagttaa acaatggcca ttgacagaag aaaaaataaa agcattagta gaaatttgta
421 cagaaatgga aaaggaaggg aaaatttcaa aaatcgggcc tgaaaatcca tacaatactc
481 cagtatttgc cataaagaaa aaagacagta ctaaatggag aaaattagtr gatttcaggg
541 aacttaataa aagaactcaa gacttctggg aagttcaatt aggaatacca catccagcag
601 ggttaaaaaa gaaaaaatct gtaacagtcc tggatgtggg tgatgcatac ttctcagtcc
661 ctttagataa agacttcagg aagtatactg catttaccat acctagtata aataatgaga
721 caccagggat cagatatcag tacaatgtgc tgccacaggg atggaaagga tcaccagcaa
781 tattccaatc tagcatgaca aaaatcttag agccttttag aaaacaaaat ccagacatag
841 ttatctatca atacatggat gatttgtatg taggatctga cttagaaata gggcagcata
901 gagcaaaaat agaggaactg agacaacatc tgttgaggtg ggggtttacc acaccagaca
961 aaaaacatca gaaagaacct ccattccttt ggatgggtta tgaactccat cctgataaat
1021 ggacagtgca gcctatagtg ctgccagaaa aggacagctg gactgtcaat gacatacaga
1081 agttagtggg aaagttaaat tgggcaagtc agatttatgc aggaattaag gtaaaggaat
1141 tatgtaaact ccttagggga accaaagcay taacagaagt aataccacta acagaagaag
1201 c
//
last modified: Tue May 31 10:56 2022