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LOCUS JF706450 2541 bp RNA linear VRL 12-APR-2011
DEFINITION HIV-1 isolate KM34BlR6 from Cameroon envelope glycoprotein (env)
gene, complete cds
ACCESSION JF706450
VERSION JF706450.1 GI:328550324
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2541)
Show all sequences for reference 1
AUTHORS Brown,R.J.P., Peters,P.J., Caron,C., Gonzalez-Perez,M.P.,
Stones,L., Ankghuambom,C., Pondei,K., McClure,C.P., Alemnji,G.,
Taylor,S., Sharp,P.M., Clapham,P.R. and Ball,J.K.
TITLE Intercompartmental Recombination of HIV-1 Contributes to env
Intrahost Diversity and Modulates Viral Tropism and Sensitivity to
Entry Inhibitors.
JOURNAL J. Virol.. 85(12); 6024-37 (2011)
PUBMED 21471230
REFERENCE 2 (bases 1 to 2541)
Show all sequences for reference 2
AUTHORS Brown,R.J.P., Peters,P.J., Caron,C., Paz Gonzalez-Perez,M.,
Stones,L., Ankghuambom,C., Pondei,K., McClure,C.P., Alemnji,G.,
Taylor,S., Sharp,P.M., Clapham,P.R. and Ball,J.K.
TITLE Direct Submission
JOURNAL Submitted (17-MAR-2011) School of Molecular Medical Sciences, The
University of Nottingham, Queen''s Medical Centre, Nottingham NG7
7UH, UK
FEATURES Location/Qualifiers
source 1..2541
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="KM34BlR6"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cameroon"
/collection_date="27-Mar-2006"
/note="subtype: U"
gene 1..2541
/gene="env"
CDS 1..2541
/gene="env"
/note="gp160"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEB22017.1"
/db_xref="GI:328550325"
/translation="MKARGTQMSWPHLWKWGTLILGLVIICSASDLWVTVYYGVPVWK
DAETTLFCASDAKGYDKEVHNVWATHACVPTDPDPQEMFLVNVSESFNMWENNMVDQM
HTDIISLWDQSLKPCVQLTPLCVTLNCTNVNTNTSSANDTLREEPDAVKNCSFNITTE
LKDKQKKEYALFYRVDVVPINNNSSSSYRLINCNTSTVTQACPKVSFEPIPIHYCAPA
GFAILKCNDKRFNGTGLCRNVSTVQCTHGIRPVVTTQLLLNGSLAENGTIIRSKNISD
NTKNIIVQFNKTVAINCTRPNNNTRKSVHIGPGQTFYATGDIIGDIRQAHCNVSGEEW
KEALQQVVIQLREHFNNETITFTNSSGGDLEIVTHSFNCGGEFFYCYTSRLFDSTWNK
TNTTDTIPNGNITLPCRIKQIINIWQRVGQAMYAPPIAGKIQCNSNITGLILIRDGGD
SNTSDEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRAKRQVVQRAKRAVGIGAV
FLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQHLLQLTVWGIKQL
QARLLAVERYLKDQQLLGIWGCSGKLICTTNVPWNSSWSNKTHDDIWENMTWMQWEKE
ISNYTDTIYGLIEKAQNQQEKNEQELLALDKWASLWSWFSITNWLWYIRLFIMIVGGL
IGLRIVFAVLNIINRCRQGYSPLSFQTLTHHQRGPDRPGEIEEGGGEQDKDRSVRLVS
GFFALAWDDLRSLCLFSYHHLRDFTLIAVRTVTRGLQLGWEALKYLWNLLAYWGQEIK
NSAINLLDTTAIAVANWTDRVIEIGQRVGRAILHIPRRIRQGFERALL"
BASE COUNT 889 a 442 c 591 g 619 t
ORIGIN
1 atgaaagcga gggggacaca gatgagttgg ccacacttgt ggaaatgggg gactttgatc
61 cttgggttgg tgataatttg tagtgcctca gacttgtggg ttacagttta ttatggggtt
121 cctgtgtgga aagatgcaga gaccacccta ttttgtgcat cagatgctaa aggatatgat
181 aaagaggtac ataatgtctg ggctacacat gcctgtgtac ctacagatcc cgacccacaa
241 gaaatgtttc tagtaaatgt atcagaaagt tttaacatgt gggagaataa catggtagac
301 cagatgcata cagacataat cagtttatgg gatcaaagct taaagccatg tgtacagtta
361 accccactct gtgttacttt aaattgtact aatgttaata ctaatactag tagtgctaat
421 gacaccctgc gggaagaacc agatgcagta aaaaactgtt ctttcaatat aaccacagaa
481 ttaaaagata aacagaaaaa agaatatgca ttgttttata gggttgatgt agtgccaatc
541 aacaacaaca gcagtagtag ttataggcta ataaattgta atacctcaac cgttacacag
601 gcttgtccaa aggtatcctt tgagccaatt cccatacatt attgtgctcc tgctggtttt
661 gcgattctaa agtgtaatga taaaaggttc aatgggacag ggctatgcag gaatgtcagc
721 acagtacaat gcacacatgg aattagacca gtggtgacaa ctcaactact gttaaatggc
781 agtctagcag aaaatggtac aataattaga tctaaaaata tctcagataa tacaaaaaac
841 ataatagtac agtttaataa aactgtagca attaattgta caagacccaa caacaataca
901 agaaaaagtg tacatatagg accaggacaa acattctatg caacaggtga cataataggg
961 gatataagac aagcacattg taatgtcagt ggagaagaat ggaaagaagc tttacaacag
1021 gtagttatac aattaaggga acactttaac aatgaaacaa taacctttac taacagttca
1081 ggaggggatt tagaaattgt aacacatagt tttaattgtg gaggagaatt cttctattgc
1141 tatacatcaa ggctatttga cagcacttgg aacaaaacta acacaactga cacaatacca
1201 aatggcaata taactctccc atgcagaata aaacaaatta taaacatatg gcaaagagta
1261 gggcaagcaa tgtatgcccc tcccattgcc ggaaaaattc aatgtaactc aaatatcaca
1321 ggtctcatat taataagaga tggtggtgat agtaatacaa gtgatgagat cttcagacct
1381 ggagggggag acatgagaga caactggaga agtgaactgt ataaatataa ggtagtgaaa
1441 attgaaccac taggagtagc acccaccagg gcaaaaagac aagtggtgca gagagcaaaa
1501 agagcagtgg gaataggagc tgtgttcctt gggttcttgg gagcagcagg aagcactatg
1561 ggcgcggcgt caataacgct gacggtacag gccagacaat tattgtctgg tatagtgcaa
1621 cagcaaagca atttgctgaa ggctatagaa gcgcaacagc atctgttgca gctcacagtc
1681 tggggcatta aacagctcca ggcgagactc ctggctgtgg aaagatacct aaaggaccaa
1741 cagcttctag ggatttgggg ctgctctgga aaactcatct gcaccactaa tgtgccctgg
1801 aattctagtt ggagtaataa aactcatgac gacatttggg aaaacatgac ctggatgcaa
1861 tgggaaaagg agattagcaa ttacacagac acaatatacg gattaattga aaaagcacaa
1921 aaccagcagg aaaagaatga acaggaatta ttggcattgg acaaatgggc aagtctgtgg
1981 agttggttta gcataacaaa ttggctatgg tatataagat tatttataat gatagtagga
2041 ggtttaatag ggttaagaat agtttttgct gtgcttaata taataaatag atgtaggcag
2101 ggatactcac ctttgtcatt ccagaccctt acccaccacc agaggggacc cgacaggccc
2161 ggagaaatcg aagaaggagg tggagagcaa gacaaagaca gatccgtgag attagtgagc
2221 ggattctttg cgcttgcctg ggacgacctg cggagcctgt gcctcttcag ctaccaccac
2281 ttgagagact tcacattaat tgcagtgagg actgtgacca ggggactgca actggggtgg
2341 gaagccctca aatatctatg gaatcttcta gcatactggg gtcaggagat aaagaatagt
2401 gctattaatt tgcttgatac aacagcaata gcagtagcta actggacaga tagagttata
2461 gaaataggac aaagagttgg tagagctatt ctccacatac ccagaagaat aagacaaggc
2521 tttgaaaggg ctttgctata a
//
last modified: Tue May 31 10:56 2022