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LOCUS	    JF706429		    2565 bp    RNA     linear	VRL 12-APR-2011
DEFINITION  HIV-1 isolate KM18BlR3 from Cameroon envelope glycoprotein (env)
	    gene, complete cds
ACCESSION   JF706429
VERSION     JF706429.1 GI:328550284
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2565)
            Show all sequences for reference 1
  AUTHORS   Brown,R.J.P., Peters,P.J., Caron,C., Gonzalez-Perez,M.P.,
	    Stones,L., Ankghuambom,C., Pondei,K., McClure,C.P., Alemnji,G.,
	    Taylor,S., Sharp,P.M., Clapham,P.R. and Ball,J.K.
  TITLE     Intercompartmental Recombination of HIV-1 Contributes to env
	    Intrahost Diversity and Modulates Viral Tropism and Sensitivity to
	    Entry Inhibitors.
  JOURNAL   J. Virol.. 85(12); 6024-37 (2011)
  PUBMED    21471230
REFERENCE   2 (bases 1 to 2565)
            Show all sequences for reference 2
  AUTHORS   Brown,R.J.P., Peters,P.J., Caron,C., Paz Gonzalez-Perez,M.,
	    Stones,L., Ankghuambom,C., Pondei,K., McClure,C.P., Alemnji,G.,
	    Taylor,S., Sharp,P.M., Clapham,P.R. and Ball,J.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAR-2011) School of Molecular Medical Sciences, The
	    University of Nottingham, Queen''s Medical Centre, Nottingham NG7
	    7UH, UK
FEATURES             Location/Qualifiers
     source	     1..2565
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="KM18BlR3"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cameroon"
		     /collection_date="17-Jun-2005"
		     /note="subtype: CRF02"
     gene	     1..2565
		     /gene="env"
     CDS	     1..2565
		     /gene="env"
		     /note="gp160"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AEB21998.1"
		     /db_xref="GI:328550285"
		     /translation="MRVMGTQKNCPLLWRWGTIIIWIMLICCNAQNMWVTVYYGVPVW
		     KDAETTLFCASDAKAYNPEVHNVWATHACVPTDPNPQEIHLKNVTENFDMWKNNMVEQ
		     MHEDIISLWDQSLKPCVKLTPLCVTLNCSQASNISQTNRNVSLNTSDMKNCSFNITTE
		     LRDKRKKEYALFYRQDVVQIDEGKNDSYYMLINCNTSTITQACPKVTFEPIPIHYCAP
		     AGFAILKCKDKEFKGTGPCRNVSTVQCIHGIKPVVTTQLLLNGSTAEEQIAIRSENFS
		     NNAKTIIVQLVNPVNITCIRPGNNTIRSMRIGPGQTFYATDEIIGDTRQAHCVVNKTE
		     WNHTLYQVATQLRTHLLNNTTIIFTNHSGGDAEVTTHSFNCGGEFFYCNTSRLFNGTL
		     NSTYGNGTWEATWGDENGTITIQCRIKQIVNMWQKVGRAMYAPPIRGEIRCESNITGL
		     LLTRDEEGNNRANETFRPGGGNMRDNWRSELYKYKVVKIEPLGVAPNHAKRRVVQREK
		     RAVGLGAVFLGFLGVAGSTMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQHLLRL
		     TVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICPTTVPWNSSWSNKTFHEIWDNM
		     TWLQWDKEISNYTETIYKLIEESQNQQEKNEQDLLALDKWDSLWSWFDITNWLWYIKI
		     FIMIVGSLIGLRIVFAVLAIINRVRQGYSPLSFQTLTHHQREPDRPGRIEEGGGEQDR
		     GRSVRLVSGFLALAWDDLRSLCLFSYHHLRDLVLIIARTVELLGHRGWRALKYLWNLL
		     SYWGQELKNSAINLLDTTAIAVANWTDSVIELVQRICRAIRNVPVRIRQGLERALL"
BASE COUNT	897 a	 458 c	  584 g    626 t
ORIGIN
       1 atgagagtga tggggacaca gaagaattgt ccactcttat ggagatgggg tacgataata 
      61 atttggataa tgttaatttg ttgtaatgct caaaatatgt gggtcacggt ctactatggg 
     121 gtgcctgtgt ggaaagatgc agagaccacc ctattttgtg catcagatgc taaggcatat 
     181 aatccagaag tacataatgt ttgggctaca catgcctgtg tacccacaga ccctaaccca 
     241 caagaaatac atttaaaaaa tgtaacagaa aattttgaca tgtggaaaaa taatatggta 
     301 gaacaaatgc atgaagatat aattagtcta tgggatcaaa gcctaaagcc atgtgtaaag 
     361 ttaacccctc tctgtgttac tttaaattgc agtcaggcct ccaacatcag tcagaccaac 
     421 agaaatgtct ctctcaacac tagtgacatg aaaaactgct ctttcaatat aaccacagaa 
     481 ctaagagata agagaaagaa agagtatgca cttttttata gacaggatgt agtacaaatt 
     541 gatgaaggaa aaaatgatag ttactatatg ttaataaatt gtaacacctc aaccattaca 
     601 caggcttgtc caaaggtaac ttttgagcca attcccatac actattgtgc tccagctggt 
     661 tttgcaattc taaagtgtaa ggataaggag ttcaagggaa cagggccatg cagaaatgtc 
     721 agcacagtac aatgtataca tggaatcaag ccagtagtaa caactcaact gctgttaaat 
     781 ggcagtacag cagaagaaca gatagcaatt agatctgaaa atttctcaaa caatgccaaa 
     841 accataatag tacagttagt taaccctgta aacattactt gtatcagacc tggcaacaat 
     901 acaatcagaa gtatgcgtat aggaccaggg caaacattct atgcaacaga tgaaataata 
     961 ggggatacaa gacaagcaca ttgtgttgtc aacaaaacag aatggaacca cactttatac 
    1021 caggtggcta cacaattaag gacacacctt ctgaataaca caacaataat ctttactaat 
    1081 cactcaggag gggatgcaga agtaacaaca catagtttta attgtggagg agaatttttc 
    1141 tattgcaata catcaagact atttaatggc actttgaata gcacgtatgg caatggcact 
    1201 tgggaagcca cttggggcga tgagaatggg actataacta tccaatgcag aataaagcaa 
    1261 attgtaaata tgtggcagaa agtaggacga gcaatgtatg cccctcccat ccgaggagaa 
    1321 ataaggtgtg aatcaaacat tacaggacta ctattaacaa gagatgaaga gggtaataat 
    1381 agggcaaatg agaccttcag gcctggagga ggaaatatga gggataactg gagaagtgag 
    1441 ttatataaat ataaagtagt aaaaattgaa ccactaggtg tagcacccaa ccatgcaaaa 
    1501 agaagagtgg tgcagagaga aaaaagagca gttggactgg gagctgtctt ccttgggttc 
    1561 ttaggagtag caggaagcac tatgggcgcg gcgtcaataa cgctgacggt acaggccaga 
    1621 caattattgt ccggtatagt gcaacagcag agtaatctgc tgaaggctat agaggctcaa 
    1681 caacatctgt tgagactcac ggtctggggt attaaacagc tccaggcaag agtcctggct 
    1741 ctggaaagat acctaaagga tcaacagctc ctaggaattt ggggctgctc tggaaaactt 
    1801 atctgcccca ctactgtacc ctggaactct agttggagta ataaaacttt tcatgagata 
    1861 tgggataaca tgacctggct gcaatgggac aaagaaatta gtaattatac agaaacaata 
    1921 tataaactaa ttgaagaatc gcaaaaccag caggaaaaga atgaacaaga tttattggca 
    1981 ttggacaagt gggacagtct gtggagttgg tttgacataa caaattggct atggtatata 
    2041 aaaatattta taatgatagt aggaagcttg ataggcttaa gaatagtttt tgctgtactt 
    2101 gctataataa atagagttag gcagggatac tcacctttgt cgtttcagac ccttacccat 
    2161 caccaaaggg aacccgacag gcccggaaga atcgaagaag gaggtggcga gcaagacaga 
    2221 ggcagatccg tgcgcttagt gagcggattc ttagcacttg cctgggacga tctgcggagc 
    2281 ctgtgcctct tcagctacca ccacttgaga gacttagtct tgatcatagc gaggactgtg 
    2341 gaacttctgg gacacagggg gtggagagcc ctcaaatatc tgtggaatct cctatcatac 
    2401 tggggtcagg aactaaagaa tagtgctatt aatttgcttg atacaactgc aatagcagta 
    2461 gctaactgga cagacagtgt tatagaatta gtacaaagaa tttgtagagc tatccgtaac 
    2521 gtacctgtaa gaatcagaca aggcctagaa agagctttgc tataa
//
last modified: Tue May 31 10:56 2022


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