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LOCUS JF706429 2565 bp RNA linear VRL 12-APR-2011
DEFINITION HIV-1 isolate KM18BlR3 from Cameroon envelope glycoprotein (env)
gene, complete cds
ACCESSION JF706429
VERSION JF706429.1 GI:328550284
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2565)
Show all sequences for reference 1
AUTHORS Brown,R.J.P., Peters,P.J., Caron,C., Gonzalez-Perez,M.P.,
Stones,L., Ankghuambom,C., Pondei,K., McClure,C.P., Alemnji,G.,
Taylor,S., Sharp,P.M., Clapham,P.R. and Ball,J.K.
TITLE Intercompartmental Recombination of HIV-1 Contributes to env
Intrahost Diversity and Modulates Viral Tropism and Sensitivity to
Entry Inhibitors.
JOURNAL J. Virol.. 85(12); 6024-37 (2011)
PUBMED 21471230
REFERENCE 2 (bases 1 to 2565)
Show all sequences for reference 2
AUTHORS Brown,R.J.P., Peters,P.J., Caron,C., Paz Gonzalez-Perez,M.,
Stones,L., Ankghuambom,C., Pondei,K., McClure,C.P., Alemnji,G.,
Taylor,S., Sharp,P.M., Clapham,P.R. and Ball,J.K.
TITLE Direct Submission
JOURNAL Submitted (17-MAR-2011) School of Molecular Medical Sciences, The
University of Nottingham, Queen''s Medical Centre, Nottingham NG7
7UH, UK
FEATURES Location/Qualifiers
source 1..2565
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="KM18BlR3"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cameroon"
/collection_date="17-Jun-2005"
/note="subtype: CRF02"
gene 1..2565
/gene="env"
CDS 1..2565
/gene="env"
/note="gp160"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AEB21998.1"
/db_xref="GI:328550285"
/translation="MRVMGTQKNCPLLWRWGTIIIWIMLICCNAQNMWVTVYYGVPVW
KDAETTLFCASDAKAYNPEVHNVWATHACVPTDPNPQEIHLKNVTENFDMWKNNMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCSQASNISQTNRNVSLNTSDMKNCSFNITTE
LRDKRKKEYALFYRQDVVQIDEGKNDSYYMLINCNTSTITQACPKVTFEPIPIHYCAP
AGFAILKCKDKEFKGTGPCRNVSTVQCIHGIKPVVTTQLLLNGSTAEEQIAIRSENFS
NNAKTIIVQLVNPVNITCIRPGNNTIRSMRIGPGQTFYATDEIIGDTRQAHCVVNKTE
WNHTLYQVATQLRTHLLNNTTIIFTNHSGGDAEVTTHSFNCGGEFFYCNTSRLFNGTL
NSTYGNGTWEATWGDENGTITIQCRIKQIVNMWQKVGRAMYAPPIRGEIRCESNITGL
LLTRDEEGNNRANETFRPGGGNMRDNWRSELYKYKVVKIEPLGVAPNHAKRRVVQREK
RAVGLGAVFLGFLGVAGSTMGAASITLTVQARQLLSGIVQQQSNLLKAIEAQQHLLRL
TVWGIKQLQARVLALERYLKDQQLLGIWGCSGKLICPTTVPWNSSWSNKTFHEIWDNM
TWLQWDKEISNYTETIYKLIEESQNQQEKNEQDLLALDKWDSLWSWFDITNWLWYIKI
FIMIVGSLIGLRIVFAVLAIINRVRQGYSPLSFQTLTHHQREPDRPGRIEEGGGEQDR
GRSVRLVSGFLALAWDDLRSLCLFSYHHLRDLVLIIARTVELLGHRGWRALKYLWNLL
SYWGQELKNSAINLLDTTAIAVANWTDSVIELVQRICRAIRNVPVRIRQGLERALL"
BASE COUNT 897 a 458 c 584 g 626 t
ORIGIN
1 atgagagtga tggggacaca gaagaattgt ccactcttat ggagatgggg tacgataata
61 atttggataa tgttaatttg ttgtaatgct caaaatatgt gggtcacggt ctactatggg
121 gtgcctgtgt ggaaagatgc agagaccacc ctattttgtg catcagatgc taaggcatat
181 aatccagaag tacataatgt ttgggctaca catgcctgtg tacccacaga ccctaaccca
241 caagaaatac atttaaaaaa tgtaacagaa aattttgaca tgtggaaaaa taatatggta
301 gaacaaatgc atgaagatat aattagtcta tgggatcaaa gcctaaagcc atgtgtaaag
361 ttaacccctc tctgtgttac tttaaattgc agtcaggcct ccaacatcag tcagaccaac
421 agaaatgtct ctctcaacac tagtgacatg aaaaactgct ctttcaatat aaccacagaa
481 ctaagagata agagaaagaa agagtatgca cttttttata gacaggatgt agtacaaatt
541 gatgaaggaa aaaatgatag ttactatatg ttaataaatt gtaacacctc aaccattaca
601 caggcttgtc caaaggtaac ttttgagcca attcccatac actattgtgc tccagctggt
661 tttgcaattc taaagtgtaa ggataaggag ttcaagggaa cagggccatg cagaaatgtc
721 agcacagtac aatgtataca tggaatcaag ccagtagtaa caactcaact gctgttaaat
781 ggcagtacag cagaagaaca gatagcaatt agatctgaaa atttctcaaa caatgccaaa
841 accataatag tacagttagt taaccctgta aacattactt gtatcagacc tggcaacaat
901 acaatcagaa gtatgcgtat aggaccaggg caaacattct atgcaacaga tgaaataata
961 ggggatacaa gacaagcaca ttgtgttgtc aacaaaacag aatggaacca cactttatac
1021 caggtggcta cacaattaag gacacacctt ctgaataaca caacaataat ctttactaat
1081 cactcaggag gggatgcaga agtaacaaca catagtttta attgtggagg agaatttttc
1141 tattgcaata catcaagact atttaatggc actttgaata gcacgtatgg caatggcact
1201 tgggaagcca cttggggcga tgagaatggg actataacta tccaatgcag aataaagcaa
1261 attgtaaata tgtggcagaa agtaggacga gcaatgtatg cccctcccat ccgaggagaa
1321 ataaggtgtg aatcaaacat tacaggacta ctattaacaa gagatgaaga gggtaataat
1381 agggcaaatg agaccttcag gcctggagga ggaaatatga gggataactg gagaagtgag
1441 ttatataaat ataaagtagt aaaaattgaa ccactaggtg tagcacccaa ccatgcaaaa
1501 agaagagtgg tgcagagaga aaaaagagca gttggactgg gagctgtctt ccttgggttc
1561 ttaggagtag caggaagcac tatgggcgcg gcgtcaataa cgctgacggt acaggccaga
1621 caattattgt ccggtatagt gcaacagcag agtaatctgc tgaaggctat agaggctcaa
1681 caacatctgt tgagactcac ggtctggggt attaaacagc tccaggcaag agtcctggct
1741 ctggaaagat acctaaagga tcaacagctc ctaggaattt ggggctgctc tggaaaactt
1801 atctgcccca ctactgtacc ctggaactct agttggagta ataaaacttt tcatgagata
1861 tgggataaca tgacctggct gcaatgggac aaagaaatta gtaattatac agaaacaata
1921 tataaactaa ttgaagaatc gcaaaaccag caggaaaaga atgaacaaga tttattggca
1981 ttggacaagt gggacagtct gtggagttgg tttgacataa caaattggct atggtatata
2041 aaaatattta taatgatagt aggaagcttg ataggcttaa gaatagtttt tgctgtactt
2101 gctataataa atagagttag gcagggatac tcacctttgt cgtttcagac ccttacccat
2161 caccaaaggg aacccgacag gcccggaaga atcgaagaag gaggtggcga gcaagacaga
2221 ggcagatccg tgcgcttagt gagcggattc ttagcacttg cctgggacga tctgcggagc
2281 ctgtgcctct tcagctacca ccacttgaga gacttagtct tgatcatagc gaggactgtg
2341 gaacttctgg gacacagggg gtggagagcc ctcaaatatc tgtggaatct cctatcatac
2401 tggggtcagg aactaaagaa tagtgctatt aatttgcttg atacaactgc aatagcagta
2461 gctaactgga cagacagtgt tatagaatta gtacaaagaa tttgtagagc tatccgtaac
2521 gtacctgtaa gaatcagaca aggcctagaa agagctttgc tataa
//
last modified: Tue May 31 10:56 2022