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LOCUS JF323585 1302 bp RNA linear VRL 27-FEB-2011
DEFINITION HIV-1 isolate CM88FK07 from Cameroon pol protein (pol) gene,
partial cds
ACCESSION JF323585
VERSION JF323585.1 GI:323710528
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Veras,N.M.C., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo Presti,A.,
Olearo,F., Cappelli,G., Colizzi,V., Takou,D., Torimiro,J.,
Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R., Perno,C.-F.,
Goodenow,M.M., Ciccozzi,M. and Salemi,M.
TITLE Molecular epidemiology of HIV type 1 CRF02_AG in Cameroon and
African patients living in Italy.
JOURNAL AIDS Res. Hum. Retroviruses. 27(11); 1173-82 (2011)
PUBMED 21453131
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Collaco Veras,N.M., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo
Presti,A., Olearo,F., Cappelli,G., Colizzi,V., Takou,D.,
Torimiro,J., Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R.,
Perno,C.-F., Goodenow,M.M., Ciccozzi,M. and Salemi,M.
TITLE Direct Submission
JOURNAL Submitted (14-FEB-2011) Experimental Medicine and Biochemical
Sciences, University of Rome Tor Vergata, Via Montpellier, 1, Rome
00133, Italy
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CM88FK07"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Cameroon"
/collection_date="01-Mar-2007"
/note="subtype: CRF02_AG"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/note="PR_RT"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADY03140.1"
/db_xref="GI:323710529"
/translation="PQITLWQRPLVTVRIEGQLVEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEIQLGIPHPAGLXKNKSVTXLDVGDAYFSVP
LDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTNNPE
IVIXQYVDDLYVGSDLEIGQHRAKIDELREHLLRWGFTTPDHKHQKEHPFLWMGYELH
PDKWTVQPIXLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTDIV
TLTEEAELELAENREILKEPVHGVYYDPAKDLVAEIQKQGQD"
BASE COUNT 510 a 211 c 277 g 298 t 6 other
ORIGIN
1 cctcaaatca ctctttggca acgaccctta gtcacagtaa gaatagaggg acagctagta
61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataaa tttaccaggg
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat
181 cagatactta tagaaatttg tgggaaaaag gctataggta cagtgttagt aggacctaca
241 cctgtcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaattttcca
301 attagtccta ttgaaactgt accagtaaaa ttgaagccag gaatggatgg cccaaaggtt
361 aagcaatggc cattgaccga agaaaaaata aaggcattaa cagaaatttg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat
541 aaaagaacac aagacttctg ggagatccaa ctaggaatac ctcatcccgc gggmttaara
601 aagaacaaat cagtaacart actagatgtg ggggatgcat atttttcagt tcccttagat
661 aaagacttta gaaagtatac tgcattcact atacctagtg taaataatga aacaccgggg
721 attagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatatttcag
781 gctagcatga caaaaatctt agagcccttt agaacaaaca atccagaaat agtgatttrc
841 caatatgtgg atgatttata tgtaggatca gacttagaga tagggcagca tagagcaaaa
901 atagatgagt taagagaaca tctactgagg tggggattta ctacaccaga ccacaaacat
961 cagaaagaac atccatttct ttggatgggg tatgaactcc atcctgacaa atggacagtc
1021 cagcctatam agctgccaga aaaagacagc tggactgtca atgatataca gaaattagtg
1081 ggaaaactaa attgggcaag tcagatttat gcaggaatta aagtaaggca attgtgtaaa
1141 ctcctcaggg gagccaaagc actcacagat atagtaacac tgactgagga agcagaatta
1201 gaattggcag agaacaggga rattctaaaa gaacctgtac atggagtata ttatgaccca
1261 gcaaaagacc tagtagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022