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LOCUS	    JF323585		    1302 bp    RNA     linear	VRL 27-FEB-2011
DEFINITION  HIV-1 isolate CM88FK07 from Cameroon pol protein (pol) gene,
	    partial cds
ACCESSION   JF323585
VERSION     JF323585.1 GI:323710528
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Veras,N.M.C., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo Presti,A.,
	    Olearo,F., Cappelli,G., Colizzi,V., Takou,D., Torimiro,J.,
	    Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R., Perno,C.-F.,
	    Goodenow,M.M., Ciccozzi,M. and Salemi,M.
  TITLE     Molecular epidemiology of HIV type 1 CRF02_AG in Cameroon and
	    African patients living in Italy.
  JOURNAL   AIDS Res. Hum. Retroviruses. 27(11); 1173-82 (2011)
  PUBMED    21453131
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Collaco Veras,N.M., Santoro,M.M., Gray,R.R., Tatem,A.J., Lo
	    Presti,A., Olearo,F., Cappelli,G., Colizzi,V., Takou,D.,
	    Torimiro,J., Russo,G., Callegaro,A., Salpini,R., D'Arrigo,R.,
	    Perno,C.-F., Goodenow,M.M., Ciccozzi,M. and Salemi,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-FEB-2011) Experimental Medicine and Biochemical
	    Sciences, University of Rome Tor Vergata, Via Montpellier, 1, Rome
	    00133, Italy
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CM88FK07"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Cameroon"
		     /collection_date="01-Mar-2007"
		     /note="subtype: CRF02_AG"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /note="PR_RT"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADY03140.1"
		     /db_xref="GI:323710529"
		     /translation="PQITLWQRPLVTVRIEGQLVEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEIQLGIPHPAGLXKNKSVTXLDVGDAYFSVP
		     LDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTNNPE
		     IVIXQYVDDLYVGSDLEIGQHRAKIDELREHLLRWGFTTPDHKHQKEHPFLWMGYELH
		     PDKWTVQPIXLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGAKALTDIV
		     TLTEEAELELAENREILKEPVHGVYYDPAKDLVAEIQKQGQD"
BASE COUNT	510 a	 211 c	  277 g    298 t      6 other
ORIGIN
       1 cctcaaatca ctctttggca acgaccctta gtcacagtaa gaatagaggg acagctagta 
      61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataaa tttaccaggg 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat 
     181 cagatactta tagaaatttg tgggaaaaag gctataggta cagtgttagt aggacctaca 
     241 cctgtcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaattttcca 
     301 attagtccta ttgaaactgt accagtaaaa ttgaagccag gaatggatgg cccaaaggtt 
     361 aagcaatggc cattgaccga agaaaaaata aaggcattaa cagaaatttg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat 
     541 aaaagaacac aagacttctg ggagatccaa ctaggaatac ctcatcccgc gggmttaara 
     601 aagaacaaat cagtaacart actagatgtg ggggatgcat atttttcagt tcccttagat 
     661 aaagacttta gaaagtatac tgcattcact atacctagtg taaataatga aacaccgggg 
     721 attagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatatttcag 
     781 gctagcatga caaaaatctt agagcccttt agaacaaaca atccagaaat agtgatttrc 
     841 caatatgtgg atgatttata tgtaggatca gacttagaga tagggcagca tagagcaaaa 
     901 atagatgagt taagagaaca tctactgagg tggggattta ctacaccaga ccacaaacat 
     961 cagaaagaac atccatttct ttggatgggg tatgaactcc atcctgacaa atggacagtc 
    1021 cagcctatam agctgccaga aaaagacagc tggactgtca atgatataca gaaattagtg 
    1081 ggaaaactaa attgggcaag tcagatttat gcaggaatta aagtaaggca attgtgtaaa 
    1141 ctcctcaggg gagccaaagc actcacagat atagtaacac tgactgagga agcagaatta 
    1201 gaattggcag agaacaggga rattctaaaa gaacctgtac atggagtata ttatgaccca 
    1261 gcaaaagacc tagtagcaga aatacagaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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