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LOCUS	    JF320037		    5072 bp    RNA     linear	VRL 11-MAR-2011
DEFINITION  HIV-1 isolate 502-0227_LH02 from USA gag protein (gag) gene,
	    complete cds; pol protein (pol) gene, partial cds; and vif protein
	    (vif) and vpr protein (vpr) genes, complete cds
ACCESSION   JF320037
VERSION     JF320037.1 GI:325634783
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 5072)
            Show all sequences for reference 1
  AUTHORS   Rolland,M., Tovanabutra,S., deCamp,A.C., Frahm,N., Gilbert,P.B.,
	    Sanders-Buell,E., Heath,L., Magaret,C.A., Bose,M., Bradfield,A.,
	    O'Sullivan,A., Crossler,J., Jones,T., Nau,M., Wong,K., Zhao,H.,
	    Ragui,D.N., Sorensen,S., Stoddard,J.N., Maust,B.S., Deng,W.,
	    Hural,J., Dubey,S., Michael,N.L., Shiver,J., Corey,L., Li,F.,
	    Self,S.G., Kim,J., Buchbinder,S., Casimiro,D.R., Robertson,M.N.,
	    Duerr,A., McElrath,M.J., McCutchan,F.E. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-FEB-2011) Microbiology, University of Washington, Box
	    358070, Seattle, WA 98195, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Rolland,M., Tovanabutra,S., deCamp,A.C., Frahm,N., Gilbert,P.B.,
	    Sanders-Buell,E., Heath,L., Magaret,C.A., Bose,M., Bradfield,A.,
	    O'Sullivan,A., Crossler,J., Jones,T., Nau,M., Wong,K., Zhao,H.,
	    Raugi,D.N., Sorensen,S., Stoddard,J.N., Maust,B.S., Deng,W.,
	    Hural,J., Dubey,S., Michael,N.L., Shiver,J., Corey,L., Li,F.,
	    Self,S.G., Kim,J., Buchbinder,S., Casimiro,D.R., Robertson,M.N.,
	    Duerr,A., McElrath,M.J., McCutchan,F.E. and Mullins,J.I.
  TITLE     Genetic impact of vaccination on breakthrough HIV-1 sequences from
	    the STEP trial.
  JOURNAL   Nat. Med.. 17(3); 366-71 (2011)
  PUBMED    21358627
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Patient cohort HVTN 502 Patient code
	    502-0227 Patient sex M HLA type B*4001 CW*0304 A*0301 CW*0303
	    A*0201 B*1501 Sample date Apr-2006 Days from last seronegative
	    sample 28 Days between evidence of infection and sampling 0 Sample
	    tissue plasma Molecule RNA Viral Load 2400000 Sequence name
	    502-0227_LH02 Subtype B ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..5072
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="502-0227_LH02"
		     /isolation_source="plasma from male vaccine recipient
		     502-0227"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="Apr-2006"
		     /note="subtype: B"
     gene	     2..1513
		     /gene="gag"
     CDS	     2..1513
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ADZ32740.1"
		     /db_xref="GI:325634784"
		     /translation="MGARASVLSGGELDRWEKIRLRPGGKKTYKLKHIVWASRELERF
		     AVNPGLLETSQGCRQILGQLQPSLPTGSEELRSLYNTIAVLYCVHQRIEVKDTKEALD
		     KIEEEQNKGKKQAQQAAADTGSSSKVSQNYPIVQNIQGQMVHQPISPRTLNAWVKVVE
		     EKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAADWDRLHPV
		     HAGPVAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRM
		     YSPASILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTIL
		     KALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQKGNFRNQRKPIKC
		     FNCGKEGHLARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSNKGRPGNFPQ
		     GRLTPTAPPAPPEESFRFGEETTNPSQRQEPIDQERYPLTSLRSLFGNDPSSQ"
     gene	     <1297..4317
		     /gene="pol"
     CDS	     <1297..4317
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADZ32741.1"
		     /db_xref="GI:325634785"
		     /translation="FFRENLAFQQGKAREFSSGQTNTNSPTSPTRRELQVWGGDNKPL
		     SKAGTDRPGTVSFNLPQITLWQRPLVAIKIGGQLKEALLDTGADDTVLEDMNLPGKWK
		     PKMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPI
		     SPIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPV
		     FAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSV
		     PLYEDFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNP
		     DMVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLGWGFTTPDKKHQKEPPFLWMGYEL
		     HPDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTEV
		     IPLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGLGQWTYQIYQEPFKNLK
		     TGKYARMRGAHTNDVKQLTEAVQKISMESIVIWGKTPKFRLPIQKETWETWWTEYWQA
		     TWIPEWEFVNTPPLVKLWYQLEKEPVVGAETFYVDGAANRETKSGKAGYVTNKGRHKV
		     ISLTDTTNQKTELQAIHLALQDSGLEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQ
		     LIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRKVLFLDGIDKAQEEHEKYHSNWRAM
		     ASDFNLPPVVAKEIVASCDKCQLKGEAMHGQVDCSPGIWQLDCTHLEGKVIIVAVHVA
		     SGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQE
		     FGIPYNPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSA
		     GERIIDIIASDLQTKALQNQITKIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDN
		     SDIKVVPRRKAKIIRDYGKQMAGDDCVASRQDED"
     gene	     4262..4840
		     /gene="vif"
     CDS	     4262..4840
		     /gene="vif"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vif protein"
		     /protein_id="ADZ32742.1"
		     /db_xref="GI:325634786"
		     /translation="MENRWQVMIVWQVDRMRIRAWKSLIKHHMYISKKARGWFYRHHY
		     ESHHPKISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKERYSTQVDPDL
		     ADQLIHLYYFNCFSESAIRNAILGHRVSPRCEYQAGHNKVGSLQYLALVALIKPKKTK
		     PPLPSVKKLTEDRWNKPQKTKGHRGNHTMNGH"
     gene	     4780..5070
		     /gene="vpr"
     CDS	     4780..5070
		     /gene="vpr"
		     /codon_start="1"
		     /transl_table="1"
		     /product="vpr protein"
		     /protein_id="ADZ32743.1"
		     /db_xref="GI:325634787"
		     /translation="MEQAPEDQGPQREPYNEWTLELLEELKNEAVRHFPRTWLHNLGQ
		     HIYETYGDTWAGVEAIIRILQQLLFIHFRIGCRHSRIGIIRQRRARNGSSRS"
BASE COUNT     1930 a	 885 c	 1179 g   1077 t      1 other
ORIGIN
       1 gatgggtgcg agagcgtcag tattaagcgg gggagaatta gatagatggg aaaaaattcg 
      61 gttaaggcca gggggaaaga aaacatataa attaaaacat atagtatggg caagcaggga 
     121 gctagaacga ttcgcagtta atcctggcct attagaaaca tcacaaggct gtagacaaat 
     181 attaggacag ttacaaccaa gccttccgac aggatcagaa gaacttagat cattatataa 
     241 tacaatagca gtcctctatt gtgtgcatca aaggatagag gtaaaagaca ccaaggaagc 
     301 tttagacaag atagaggagg agcaaaacaa aggtaagaaa caggcacagc aagcagcagc 
     361 tgacacagga agtagcagca aggtcagcca aaattaccct atagtgcaga acatccaggg 
     421 gcaaatggta catcagccca tatcacctag aactttaaat gcatgggtaa aagtagtaga 
     481 agagaaggct ttcagcccag aagtaatacc catgttttca gcattatcag aaggagccac 
     541 cccacaagat ctaaatacca tgctaaacac agtgggggga caccaagcag ctatgcaaat 
     601 gttaaaagag accatcaatg aggaagctgc agattgggat agattacatc cagtgcatgc 
     661 agggcctgtt gcaccaggcc agatgagaga accaagggga agtgacatag caggaactac 
     721 tagtaccctt caggaacaaa taggatggat gacaaataat ccacctatcc cagtaggaga 
     781 aatctataaa agatggataa tcctgggatt aaataaaata gtaaggatgt atagtcccgc 
     841 cagcattctg gacataagac aaggaccaaa agaacccttt agagactatg tagaccggtt 
     901 ctataaaact ctaagagccg agcaagcctc acaggaggta aaaaattgga tgacagaaac 
     961 cttgttggtc cagaatgcga acccagattg taaaacaatt ttaaaagcat tgggaccagg 
    1021 agctacacta gaagaaatga tgacagcatg tcagggagtg ggaggacctg gccataaagc 
    1081 aagagttttg gcagaagcaa tgagccaagt aacaaattca gctacaataa tgatgcagaa 
    1141 aggcaacttt aggaaccaaa gaaagcctat taagtgtttc aattgtggca aagaagggca 
    1201 cctagctaga aattgcaggg ctcctaggaa aagaggctgc tggaaatgtg gaaaggaagg 
    1261 acaccaaatg aaagattgta ctgagaggca ggctaatttt ttagggaaaa tctggccttc 
    1321 caacaaggga aggccaggga attttcctca gggcagacta acaccaacag ccccaccagc 
    1381 cccaccagaa gagagcttca ggtttgggga ggagacaaca aacccctctc aaaggcagga 
    1441 accgatagac caggaacggt atcctttaac ctccctcaga tcactctttg gcaacgaccc 
    1501 ctcgtcgcaa taaagatagg ggggcaacta aaagaggctc tattagatac aggagcagat 
    1561 gatacagtat tagaagacat gaatttgcca ggaaaatgga aaccaaaaat gataggggga 
    1621 attggaggtt ttatcaaagt aagacaatat gatcagatac ctatagaaat ctgtggacat 
    1681 aaagctatag gtacagtatt agtaggaccc acacctgtca acataattgg aagaaatctg 
    1741 ttgactcaac ttggttgcac tttaaatttt cccattagtc ctattgaaac tgtaccagta 
    1801 aaattaaagc caggtatgga tggcccaaaa gttaaacaat ggccattgac agaagaaaaa 
    1861 ataaaagcat tagtagaaat ttgtacagag atggaaaagg aagggaaaat ttcaaaaatt 
    1921 gggcctgaaa atccatacaa tactccagta tttgccataa agaaaaaaga tagtactaaa 
    1981 tggagaaaat tagtagattt cagagaactt aataagagaa ctcaagactt ctgggaagtc 
    2041 caattaggaa taccccatcc cgcggggtta aaaaagaaaa aatcagtaac agtattagat 
    2101 gtgggggatg catatttttc agttccctta tatgaagatt tcaggaagta tactgcattt 
    2161 accataccta gtacaaacaa tgagacacca gggattagat atcagtacaa tgtgcttcca 
    2221 cagggatgga aaggatcacc agcaatattc caatgcagca tgacaaaaat cttagagcct 
    2281 ttcagaaaac aaaatccaga catggttatc tatcaataca tggatgatct gtatgtaggt 
    2341 tctgatttgg aaatagggca gcatagaaca aaaatagagg aactgagaca acatctgttg 
    2401 ggatggggat ttaccacacc agacaaaaaa catcagaaag aacctccatt cctttggatg 
    2461 ggttatgaac tccaccctga taaatggaca gtacagccta tagtgctgcc agaaaaagac 
    2521 agctggactg tcaatgacat acagaagtta gtgggaaaac taaattgggc gagtcagatt 
    2581 tacccaggaa ttaaagtcag gcaattatgt aaactcctta ggggagccaa agcactaaca 
    2641 gaagtaatac cactgacaga agaagcagag ctagaactgg cagaaaacag ggaaattcta 
    2701 aaagaaccag tacatggagt gtattatgac ccatcaaaag acttaatagc agagatacag 
    2761 aaacaggggc taggtcaatg gacatatcaa atttatcaag agccatttaa aaatctgaaa 
    2821 acaggaaaat atgcaagaat gaggggtgcc cacactaatg atgtaaaaca gttaacagag 
    2881 gcagtgcaaa aaatatccat ggaaagcata gtaatatggg gaaaaactcc taaatttaga 
    2941 ctacccatac aaaaagaaac gtgggaaaca tggtggacag agtattggca ggccacctgg 
    3001 attcctgaat gggagtttgt caatacccct cccttagtga aattatggta ccagttagag 
    3061 aaagaacccg tagtaggagc agagactttc tatgtagatg gggcagctaa tagggagact 
    3121 aaatcaggaa aagcaggata ygttactaat aaaggaagac acaaagtcat ctccctaact 
    3181 gacacaacaa atcagaagac tgagttacaa gcaattcatc tagctttaca ggactcggga 
    3241 ttggaagtaa acattgtaac agactcacaa tatgcattag gaattattca agcacaacca 
    3301 gataaaagtg aatcagaatt agttaatcaa ataatagagc agttaataaa aaaggaaaag 
    3361 gtctacctgg catgggtacc agcacacaaa ggaattggag gaaatgaaca agtagataaa 
    3421 ttagtcagtg ctggaatcag gaaagtacta tttttagatg gaatagataa agcccaagaa 
    3481 gaacatgaaa aatatcacag taattggaga gcaatggcta gtgattttaa cctgccacct 
    3541 gtagtagcaa aggagatagt agccagttgt gacaaatgtc agctaaaagg ggaagccatg 
    3601 catggacaag tagactgtag tccaggaata tggcaactag actgtacaca tttggaagga 
    3661 aaggttatca tagtagcagt tcatgtagcc agtggatata tagaagcaga agttattcca 
    3721 gcagagacag ggcaggaaac agcatacttc ctcttaaaat tagctggacg atggccagta 
    3781 aaaacaatac atacagacaa tggcagcaat ttcaccagta ctacagttaa ggccgcctgt 
    3841 tggtgggcgg ggatcaagca ggaatttggc atcccctaca atccccaaag tcaaggagta 
    3901 gtagaatcta tgaataaaga gttaaagaaa attataggac aggtaaggga tcaggctgaa 
    3961 catcttaaga cagcagtaca aatggcagta ttcattcaca attttaaaag aaaagggggg 
    4021 attggggggt acagtgcagg ggaaagaata atagacataa tagcatcaga cctacaaact 
    4081 aaagcactac aaaaccaaat tacaaaaatt caaaattttc gggtttatta cagggacagc 
    4141 agagatccac tttggaaagg accagcaaag ctgctctgga aaggtgaagg ggcagtagta 
    4201 atacaagata atagtgacat aaaagtagtg ccaagaagaa aagcaaagat cattagggat 
    4261 tatggaaaac agatggcagg tgatgattgt gtggcaagta gacaggatga ggattagagc 
    4321 atggaaaagt ttaataaaac accatatgta tatttcaaag aaagctaggg gatggtttta 
    4381 tagacatcac tatgaaagcc atcatccaaa aataagttca gaagtacaca tcccactagg 
    4441 ggatgctaga ttggtaataa caacatattg gggactgcat acaggagaaa gagattggca 
    4501 tttgggtcag ggagtctcca tagaatggag gaaagaaaga tatagcacac aagtagaccc 
    4561 tgacctagca gaccaactaa ttcacctgta ttactttaat tgtttttcag aatctgctat 
    4621 aagaaatgcc atattaggac atagagttag tcctaggtgt gaatatcaag caggacataa 
    4681 caaggtagga tctctacagt acttggcact agtagcattg ataaaaccaa aaaagacaaa 
    4741 gccacctttg cctagtgtta agaaactgac agaggataga tggaacaagc cccagaagac 
    4801 caagggccac agagggaacc atacaatgaa tggacactag agcttttaga ggagcttaag 
    4861 aatgaagctg tcaggcattt tcctaggaca tggctccata acttaggaca acatatctat 
    4921 gaaacttatg gagatacttg ggcaggagtg gaggccataa taagaattct gcaacaactg 
    4981 ctgtttattc atttcagaat tgggtgccga catagcagaa taggcattat tcgacagagg 
    5041 agagcaagaa atggatccag tagatcctag ac
//
last modified: Tue May 31 10:56 2022


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