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LOCUS HQ537842 877 bp DNA linear VRL 16-NOV-2010
DEFINITION HIV-1 clone EN_COT07a from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION HQ537842
VERSION HQ537842.1 GI:312162965
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 877)
Show all sequences for reference 1
AUTHORS Scaduto,D.I., Brown,J.M., Haaland,W.C., Zwickl,D.J., Hillis,D.M.
and Metzker,M.L.
TITLE Inaugural Article: Source identification in two criminal cases
using phylogenetic analysis of HIV-1 DNA sequences.
JOURNAL Proc Natl Acad Sci U S A. 2010 Nov 15.
PUBMED 21078965
REFERENCE 2 (bases 1 to 877)
Show all sequences for reference 2
AUTHORS Haaland,W.C. and Metzker,M.L.
TITLE Direct Submission
JOURNAL Submitted (01-NOV-2010) Human Genome Sequencing Center, Baylor
College of Medicine, One Baylor Plaza, Houston, TX 77030, USA
FEATURES Location/Qualifiers
source 1..877
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="EN_COT07a"
/country="USA"
/collection_date="2004"
gene <1..>877
/gene="env"
CDS <1..>877
/gene="env"
/note="gp120"
/codon_start="2"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADQ37438.1"
/db_xref="GI:312162966"
/translation="ILKCNDKKFNGSGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEE
ETVIRSENFTDNAKTIIVQLNESVAITCLRPNNNTRKSIHIGPGKAFYATGQIIGDIR
QAHCNISRSSWNNTLKQIVKKLGEQSGNKTIIFNQSSGGDPEIVRYSFNCGGEFFYCD
STKLFNSTWRFNDTWESNSTGDNTTGTNDTITLPCRIRQIVNMWQQVGKAMYAPPISG
QIRCSSNITGLLLTRDGGGGNDTNDTRNETFRPGGGDMRDNWRSELYKYKVVRIKPLG
IAPTKAKRRVVQRERR"
BASE COUNT 353 a 130 c 189 g 205 t
ORIGIN
1 gattctaaag tgtaatgata agaagttcaa tggatcagga ccatgtaaaa atgttagtac
61 agtacaatgt acacatggaa ttagaccagt agtatcaact caactgctgt taaatggcag
121 tctagcagaa gaagagacag taattagatc tgaaaatttc acagataatg ctaaaaccat
181 aatagtacag ctgaatgagt ctgtagcaat tacttgttta agacccaaca acaatacaag
241 aaaaagcata catataggac cagggaaagc attttatgca acaggacaaa taataggaga
301 tataagacaa gcacactgta acattagtag aagcagttgg aataacacct taaaacaaat
361 agttaaaaaa ttaggagaac aatctgggaa taaaacaata atctttaatc aatcctcagg
421 aggggaccca gaaattgtaa ggtacagttt taattgtgga ggggaatttt tctactgtga
481 ttcaacaaaa ctgtttaata gtacttggag gtttaatgat acttgggagt ctaatagtac
541 tggggataat actacaggga caaatgacac tatcacactc ccatgcagaa taagacaaat
601 tgtaaacatg tggcagcagg taggaaaagc aatgtatgcc cctcccatca gtggacaaat
661 tagatgttca tcaaatatta caggattgct attaacaaga gatggtggtg gtggtaatga
721 caccaatgac accaggaacg agaccttcag acctggagga ggagatatga gggacaattg
781 gagaagtgaa ttatataaat ataaagtagt aagaattaaa ccattaggaa tagcacccac
841 caaggcaaag agaagagtgg tgcaaagaga aagaaga
//
last modified: Tue May 31 10:56 2022