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LOCUS HQ528565 288 bp RNA linear VRL 29-NOV-2010
DEFINITION HIV-1 isolate 08004288 from USA pol protein (pol) gene, partial cds
ACCESSION HQ528565
VERSION HQ528565.1 GI:312603580
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 288)
Show all sequences for reference 1
AUTHORS Jain,V. and Spotts,G.
TITLE Direct Submission
JOURNAL Submitted (02-NOV-2010) Medicine - SFGH - Positive Health Program,
University of California San Francisco (UCSF), 995 Potrero Avenue,
4th Floor, San Francisco, CA 94110, USA
REFERENCE 2
Show all sequences for reference 2
AUTHORS Jain,V., Sucupira,M.C., Bacchetti,P., Hartogensis,W., Diaz,R.S.,
Kallas,E.G., Janini,L.M., Liegler,T., Pilcher,C.D., Grant,R.M.,
Cortes,R., Deeks,S.G. and Hecht,F.M.
TITLE Differential Persistence of Transmitted HIV-1 Drug Resistance
Mutation Classes
JOURNAL J. Infect. Dis. 203 (8), 1174-1181 (2011)
PUBMED 21451005
FEATURES Location/Qualifiers
source 1..288
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="08004288"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="05-Jan-2004"
gene <1..>288
/gene="pol"
CDS <1..>288
/gene="pol"
/note="contains protease"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADQ92875.1"
/db_xref="GI:312603581"
/translation="TLWQRPFVTIKVEGQLIEALIDTGADDTVLEEMNLPGRWTPKII
GGIGGFVRVRQYDQVHIEICGHKVIGTVLIGPTPANIIGRBLLAQIGCTLNF"
BASE COUNT 104 a 43 c 68 g 72 t 1 other
ORIGIN
1 actctttggc aacgaccctt cgtcacaata aaggtagagg ggcaattaat agaagctcta
61 atagatacag gagcagatga tacagtacta gaagaaatga atttaccagg aaggtggaca
121 ccaaaaataa tagggggaat tggagggttt gtcagagtaa gacagtatga tcaggtacac
181 atagaaatct gtggacataa agttataggt acagtattaa taggacctac acctgccaac
241 ataattggaa garatctgtt ggctcagatt ggttgcactt taaatttt
//
last modified: Tue May 31 10:56 2022