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LOCUS	    HQ528565		     288 bp    RNA     linear	VRL 29-NOV-2010
DEFINITION  HIV-1 isolate 08004288 from USA pol protein (pol) gene, partial cds
ACCESSION   HQ528565
VERSION     HQ528565.1 GI:312603580
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 288)
            Show all sequences for reference 1
  AUTHORS   Jain,V. and Spotts,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-NOV-2010) Medicine - SFGH - Positive Health Program,
	    University of California San Francisco (UCSF), 995 Potrero Avenue,
	    4th Floor, San Francisco, CA 94110, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Jain,V., Sucupira,M.C., Bacchetti,P., Hartogensis,W., Diaz,R.S.,
	    Kallas,E.G., Janini,L.M., Liegler,T., Pilcher,C.D., Grant,R.M.,
	    Cortes,R., Deeks,S.G. and Hecht,F.M.
  TITLE     Differential Persistence of Transmitted HIV-1 Drug Resistance
	    Mutation Classes
  JOURNAL   J. Infect. Dis. 203 (8), 1174-1181 (2011)
  PUBMED    21451005
FEATURES             Location/Qualifiers
     source	     1..288
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="08004288"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="05-Jan-2004"
     gene	     <1..>288
		     /gene="pol"
     CDS	     <1..>288
		     /gene="pol"
		     /note="contains protease"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADQ92875.1"
		     /db_xref="GI:312603581"
		     /translation="TLWQRPFVTIKVEGQLIEALIDTGADDTVLEEMNLPGRWTPKII
		     GGIGGFVRVRQYDQVHIEICGHKVIGTVLIGPTPANIIGRBLLAQIGCTLNF"
BASE COUNT	104 a	  43 c	   68 g     72 t      1 other
ORIGIN
       1 actctttggc aacgaccctt cgtcacaata aaggtagagg ggcaattaat agaagctcta 
      61 atagatacag gagcagatga tacagtacta gaagaaatga atttaccagg aaggtggaca 
     121 ccaaaaataa tagggggaat tggagggttt gtcagagtaa gacagtatga tcaggtacac 
     181 atagaaatct gtggacataa agttataggt acagtattaa taggacctac acctgccaac 
     241 ataattggaa garatctgtt ggctcagatt ggttgcactt taaatttt
//
last modified: Tue May 31 10:56 2022


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