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LOCUS HQ528564 288 bp RNA linear VRL 29-NOV-2010
DEFINITION HIV-1 isolate 08002998 from USA pol protein (pol) gene, partial cds
ACCESSION HQ528564
VERSION HQ528564.1 GI:312603578
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 288)
Show all sequences for reference 1
AUTHORS Jain,V. and Spotts,G.
TITLE Direct Submission
JOURNAL Submitted (02-NOV-2010) Medicine - SFGH - Positive Health Program,
University of California San Francisco (UCSF), 995 Potrero Avenue,
4th Floor, San Francisco, CA 94110, USA
REFERENCE 2
Show all sequences for reference 2
AUTHORS Jain,V., Sucupira,M.C., Bacchetti,P., Hartogensis,W., Diaz,R.S.,
Kallas,E.G., Janini,L.M., Liegler,T., Pilcher,C.D., Grant,R.M.,
Cortes,R., Deeks,S.G. and Hecht,F.M.
TITLE Differential Persistence of Transmitted HIV-1 Drug Resistance
Mutation Classes
JOURNAL J. Infect. Dis. 203 (8), 1174-1181 (2011)
PUBMED 21451005
FEATURES Location/Qualifiers
source 1..288
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="08002998"
/isolation_source="plasma"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
/collection_date="24-Jan-2007"
gene <1..>288
/gene="pol"
CDS <1..>288
/gene="pol"
/note="contains protease"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ADQ92874.1"
/db_xref="GI:312603579"
/translation="TLWQRPIVTIKVGGQIREALLDTGADDTVLEDIELPGKWKPKMI
GGIGGFVKVREYNQVPIEICGHRVIXTVLVGPTPANIIGRNLMTQLGCTLNF"
BASE COUNT 104 a 40 c 69 g 74 t 1 other
ORIGIN
1 actctttggc aacgacccat cgtcacaata aaggtagggg ggcaaataag ggaggcttta
61 ttagatacag gagcagatga tacagtatta gaagatatag aattgccagg aaaatggaaa
121 ccaaaaatga tagggggaat tggaggtttt gtcaaagtaa gagaatataa tcaagtaccc
181 atagaaatct gtgggcatag agttattrgt acagtattag taggacctac acctgccaac
241 ataattggaa gaaatctaat gactcagctt ggttgtactt tgaatttt
//
last modified: Tue May 31 10:56 2022