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LOCUS	    HQ528564		     288 bp    RNA     linear	VRL 29-NOV-2010
DEFINITION  HIV-1 isolate 08002998 from USA pol protein (pol) gene, partial cds
ACCESSION   HQ528564
VERSION     HQ528564.1 GI:312603578
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 288)
            Show all sequences for reference 1
  AUTHORS   Jain,V. and Spotts,G.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-NOV-2010) Medicine - SFGH - Positive Health Program,
	    University of California San Francisco (UCSF), 995 Potrero Avenue,
	    4th Floor, San Francisco, CA 94110, USA
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Jain,V., Sucupira,M.C., Bacchetti,P., Hartogensis,W., Diaz,R.S.,
	    Kallas,E.G., Janini,L.M., Liegler,T., Pilcher,C.D., Grant,R.M.,
	    Cortes,R., Deeks,S.G. and Hecht,F.M.
  TITLE     Differential Persistence of Transmitted HIV-1 Drug Resistance
	    Mutation Classes
  JOURNAL   J. Infect. Dis. 203 (8), 1174-1181 (2011)
  PUBMED    21451005
FEATURES             Location/Qualifiers
     source	     1..288
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="08002998"
		     /isolation_source="plasma"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="24-Jan-2007"
     gene	     <1..>288
		     /gene="pol"
     CDS	     <1..>288
		     /gene="pol"
		     /note="contains protease"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ADQ92874.1"
		     /db_xref="GI:312603579"
		     /translation="TLWQRPIVTIKVGGQIREALLDTGADDTVLEDIELPGKWKPKMI
		     GGIGGFVKVREYNQVPIEICGHRVIXTVLVGPTPANIIGRNLMTQLGCTLNF"
BASE COUNT	104 a	  40 c	   69 g     74 t      1 other
ORIGIN
       1 actctttggc aacgacccat cgtcacaata aaggtagggg ggcaaataag ggaggcttta 
      61 ttagatacag gagcagatga tacagtatta gaagatatag aattgccagg aaaatggaaa 
     121 ccaaaaatga tagggggaat tggaggtttt gtcaaagtaa gagaatataa tcaagtaccc 
     181 atagaaatct gtgggcatag agttattrgt acagtattag taggacctac acctgccaac 
     241 ataattggaa gaaatctaat gactcagctt ggttgtactt tgaatttt
//
last modified: Tue May 31 10:56 2022


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