HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    HQ426784		     991 bp    DNA     linear	VRL 08-AUG-2011
DEFINITION  HIV-1 isolate BMO12120989 from Spain polyprotein (pol) gene,
	    partial cds
ACCESSION   HQ426784
VERSION     HQ426784.1 GI:342358458
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 991)
            Show all sequences for reference 1
  AUTHORS   de,M., Yebra,G., Martin,L., Prieto,L., Mellado,M.J., Rojo,P.,
	    Munoz-Fernandez,M.A., Jimenez,d., Ramos,J.T. and Holguin,A.
  TITLE     Drug resistance prevalence and HIV-1 variant characterization in
	    the naive and pretreated HIV-1-infected paediatric population in
	    Madrid, Spain.
  JOURNAL   J Antimicrob Chemother. 2011 Aug 2.
  PUBMED    21810838
REFERENCE   2 (bases 1 to 991)
            Show all sequences for reference 2
  AUTHORS   De Mulder,M., Yebra,G., Martin,L., Holguin,A., Prieto,L.,
	    Mellado,M.J., Rojo,P. and Ramos,J.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2010) HIV-1 Molecular Epidemiology Laboratory,
	    Hospital Ramon y Cajal, Ctra. Colmenar Viejo Km 9.100, Madrid
	    28034, Spain
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Pagan,I., Rojas,P., Ramos,J.T. and Holguin,A.
  TITLE     Clinical Determinants of HIV-1B Between-Host Evolution and their
	    Association with Drug Resistance in Pediatric Patients.
  JOURNAL   PLoS. One.. 11(12); e0167383 (2016)
  PUBMED    27907076
FEATURES             Location/Qualifiers
     source	     1..991
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="BMO12120989"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Spain"
		     /collection_date="2006"
		     /note="subtype: B"
     gene	     <1..>991
		     /gene="pol"
     CDS	     <1..>991
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="polyprotein"
		     /protein_id="AEL29314.1"
		     /db_xref="GI:342358459"
		     /translation="PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEINLPGRWTP
		     KMIGGIGGFIKVKQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIF
		     AIRKKNSNKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPD
		     MVIYQYMDDLYVGSDLEIGQHRAKVEELRQHLLRWGFTTPDEKHQKEPPFLWMG"
     mat_peptide     <1..297
		     /gene="pol"
		     /product="protease"
     mat_peptide     298..>991
		     /gene="pol"
		     /product="reverse transcriptase"
BASE COUNT	382 a	 165 c	  211 g    233 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa aggtaggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgcctgga 
     121 agatggacgc caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat 
     181 cagataccca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgttaaca taattggaag aaatctgttg actcagattg gttgcacttt aaacttcccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaacc catacaatac cccaatattt 
     481 gccataagga aaaagaacag taataaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaggttcaa ttagggatac cacatcccgc agggttaaaa 
     601 aagaagaaat cagtaacagt actagatgtg ggtgatgcat atttttcagt tcccctagat 
     661 gaagacttca ggaagtatac tgcatttacc atacccagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gctcccacag ggatggaaag gatcaccagc gatattccaa 
     781 agtagcatga caagaatctt agagcctttt agaaaacaaa atccagacat ggttatttat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagagcaaaa 
     901 gtagaagaac tgagacaaca tctgttgagg tggggattta ccacaccaga tgaaaaacat 
     961 cagaaagaac ctccattcct ttggatggga t
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.