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LOCUS HQ426784 991 bp DNA linear VRL 08-AUG-2011
DEFINITION HIV-1 isolate BMO12120989 from Spain polyprotein (pol) gene,
partial cds
ACCESSION HQ426784
VERSION HQ426784.1 GI:342358458
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 991)
Show all sequences for reference 1
AUTHORS de,M., Yebra,G., Martin,L., Prieto,L., Mellado,M.J., Rojo,P.,
Munoz-Fernandez,M.A., Jimenez,d., Ramos,J.T. and Holguin,A.
TITLE Drug resistance prevalence and HIV-1 variant characterization in
the naive and pretreated HIV-1-infected paediatric population in
Madrid, Spain.
JOURNAL J Antimicrob Chemother. 2011 Aug 2.
PUBMED 21810838
REFERENCE 2 (bases 1 to 991)
Show all sequences for reference 2
AUTHORS De Mulder,M., Yebra,G., Martin,L., Holguin,A., Prieto,L.,
Mellado,M.J., Rojo,P. and Ramos,J.T.
TITLE Direct Submission
JOURNAL Submitted (21-OCT-2010) HIV-1 Molecular Epidemiology Laboratory,
Hospital Ramon y Cajal, Ctra. Colmenar Viejo Km 9.100, Madrid
28034, Spain
REFERENCE 3
Show all sequences for reference 3
AUTHORS Pagan,I., Rojas,P., Ramos,J.T. and Holguin,A.
TITLE Clinical Determinants of HIV-1B Between-Host Evolution and their
Association with Drug Resistance in Pediatric Patients.
JOURNAL PLoS. One.. 11(12); e0167383 (2016)
PUBMED 27907076
FEATURES Location/Qualifiers
source 1..991
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="BMO12120989"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Spain"
/collection_date="2006"
/note="subtype: B"
gene <1..>991
/gene="pol"
CDS <1..>991
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="polyprotein"
/protein_id="AEL29314.1"
/db_xref="GI:342358459"
/translation="PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEINLPGRWTP
KMIGGIGGFIKVKQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPIF
AIRKKNSNKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTRILEPFRKQNPD
MVIYQYMDDLYVGSDLEIGQHRAKVEELRQHLLRWGFTTPDEKHQKEPPFLWMG"
mat_peptide <1..297
/gene="pol"
/product="protease"
mat_peptide 298..>991
/gene="pol"
/product="reverse transcriptase"
BASE COUNT 382 a 165 c 211 g 233 t
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa aggtaggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgcctgga
121 agatggacgc caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat
181 cagataccca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgttaaca taattggaag aaatctgttg actcagattg gttgcacttt aaacttcccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaacc catacaatac cccaatattt
481 gccataagga aaaagaacag taataaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaggttcaa ttagggatac cacatcccgc agggttaaaa
601 aagaagaaat cagtaacagt actagatgtg ggtgatgcat atttttcagt tcccctagat
661 gaagacttca ggaagtatac tgcatttacc atacccagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gctcccacag ggatggaaag gatcaccagc gatattccaa
781 agtagcatga caagaatctt agagcctttt agaaaacaaa atccagacat ggttatttat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagagcaaaa
901 gtagaagaac tgagacaaca tctgttgagg tggggattta ccacaccaga tgaaaaacat
961 cagaaagaac ctccattcct ttggatggga t
//
last modified: Tue May 31 10:56 2022