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LOCUS	    HQ426774		    1302 bp    DNA     linear	VRL 08-AUG-2011
DEFINITION  HIV-1 isolate KMP12250800 from Spain polyprotein (pol) gene,
	    partial cds
ACCESSION   HQ426774
VERSION     HQ426774.1 GI:342358438
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   de,M., Yebra,G., Martin,L., Prieto,L., Mellado,M.J., Rojo,P.,
	    Munoz-Fernandez,M.A., Jimenez,d., Ramos,J.T. and Holguin,A.
  TITLE     Drug resistance prevalence and HIV-1 variant characterization in
	    the naive and pretreated HIV-1-infected paediatric population in
	    Madrid, Spain.
  JOURNAL   J Antimicrob Chemother. 2011 Aug 2.
  PUBMED    21810838
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   De Mulder,M., Yebra,G., Martin,L., Holguin,A., Prieto,L.,
	    Mellado,M.J., Rojo,P. and Ramos,J.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2010) HIV-1 Molecular Epidemiology Laboratory,
	    Hospital Ramon y Cajal, Ctra. Colmenar Viejo Km 9.100, Madrid
	    28034, Spain
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Pagan,I., Rojas,P., Ramos,J.T. and Holguin,A.
  TITLE     Clinical Determinants of HIV-1B Between-Host Evolution and their
	    Association with Drug Resistance in Pediatric Patients.
  JOURNAL   PLoS. One.. 11(12); e0167383 (2016)
  PUBMED    27907076
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="KMP12250800"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Spain"
		     /collection_date="2002"
		     /note="subtype: B"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="polyprotein"
		     /protein_id="AEL29304.1"
		     /db_xref="GI:342358439"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
		     KMIGGIGGFIKVRQYDQITIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFXIS
		     PIXTVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFREQNPN
		     IVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPITLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVV
		     PLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGLG"
     mat_peptide     <1..297
		     /gene="pol"
		     /product="protease"
     mat_peptide     298..>1302
		     /gene="pol"
		     /product="reverse transcriptase"
BASE COUNT	526 a	 219 c	  267 g    288 t      2 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggagg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat 
     181 cagataacca tagaaatctg tggacataaa gctataggta cagtattaat aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcactct aaattttcyc 
     301 attagtccta ttraaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa tagaaatttg tacagaaatg 
     421 gagaaagaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagatag tactaaatgg agaaaactag tagatttcag ggaacttaac 
     541 aagaaaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt cccattagat 
     661 gaagacttca ggaaatatac tgcatttacc atacctagca taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agcagcatga caaaaatcct agagcctttt agggaacaaa atccaaacat agttatatat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaga tagaacagca tagaacaaaa 
     901 atagaggaac tgagacaaca tctgttgaag tggggattta ccacaccaga caaaaagcat 
     961 cagaaagaac ccccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctataa cactgccaga aaaggacagc tggactgtca atgacataca gaagttagta 
    1081 ggaaaattga attgggcaag tcagatttac gcagggatca aagtaaagca attatgtaaa 
    1141 ctccttaggg gaaccaaagc actaacagaa gtagtaccac taacaaaaga agcagaacta 
    1201 gaactggcag aaaacaggga gattctaaaa gaaccagtac atggagtgta ttatgaccca 
    1261 tcaaaagact taatagcaga aatacagaag caggggctag gc
//
last modified: Tue May 31 10:56 2022


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