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LOCUS HQ426774 1302 bp DNA linear VRL 08-AUG-2011
DEFINITION HIV-1 isolate KMP12250800 from Spain polyprotein (pol) gene,
partial cds
ACCESSION HQ426774
VERSION HQ426774.1 GI:342358438
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS de,M., Yebra,G., Martin,L., Prieto,L., Mellado,M.J., Rojo,P.,
Munoz-Fernandez,M.A., Jimenez,d., Ramos,J.T. and Holguin,A.
TITLE Drug resistance prevalence and HIV-1 variant characterization in
the naive and pretreated HIV-1-infected paediatric population in
Madrid, Spain.
JOURNAL J Antimicrob Chemother. 2011 Aug 2.
PUBMED 21810838
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS De Mulder,M., Yebra,G., Martin,L., Holguin,A., Prieto,L.,
Mellado,M.J., Rojo,P. and Ramos,J.T.
TITLE Direct Submission
JOURNAL Submitted (21-OCT-2010) HIV-1 Molecular Epidemiology Laboratory,
Hospital Ramon y Cajal, Ctra. Colmenar Viejo Km 9.100, Madrid
28034, Spain
REFERENCE 3
Show all sequences for reference 3
AUTHORS Pagan,I., Rojas,P., Ramos,J.T. and Holguin,A.
TITLE Clinical Determinants of HIV-1B Between-Host Evolution and their
Association with Drug Resistance in Pediatric Patients.
JOURNAL PLoS. One.. 11(12); e0167383 (2016)
PUBMED 27907076
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="KMP12250800"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Spain"
/collection_date="2002"
/note="subtype: B"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="polyprotein"
/protein_id="AEL29304.1"
/db_xref="GI:342358439"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
KMIGGIGGFIKVRQYDQITIEICGHKAIGTVLIGPTPVNIIGRNLLTQIGCTLNFXIS
PIXTVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFREQNPN
IVIYQYMDDLYVGSDLEIEQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPITLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVV
PLTKEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGLG"
mat_peptide <1..297
/gene="pol"
/product="protease"
mat_peptide 298..>1302
/gene="pol"
/product="reverse transcriptase"
BASE COUNT 526 a 219 c 267 g 288 t 2 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggagg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acaatatgat
181 cagataacca tagaaatctg tggacataaa gctataggta cagtattaat aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcactct aaattttcyc
301 attagtccta ttraaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa tagaaatttg tacagaaatg
421 gagaaagaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagatag tactaaatgg agaaaactag tagatttcag ggaacttaac
541 aagaaaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt cccattagat
661 gaagacttca ggaaatatac tgcatttacc atacctagca taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agcagcatga caaaaatcct agagcctttt agggaacaaa atccaaacat agttatatat
841 caatacatgg atgatttgta tgtaggatct gacttagaga tagaacagca tagaacaaaa
901 atagaggaac tgagacaaca tctgttgaag tggggattta ccacaccaga caaaaagcat
961 cagaaagaac ccccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctataa cactgccaga aaaggacagc tggactgtca atgacataca gaagttagta
1081 ggaaaattga attgggcaag tcagatttac gcagggatca aagtaaagca attatgtaaa
1141 ctccttaggg gaaccaaagc actaacagaa gtagtaccac taacaaaaga agcagaacta
1201 gaactggcag aaaacaggga gattctaaaa gaaccagtac atggagtgta ttatgaccca
1261 tcaaaagact taatagcaga aatacagaag caggggctag gc
//
last modified: Tue May 31 10:56 2022