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LOCUS HQ426760 1274 bp DNA linear VRL 08-AUG-2011
DEFINITION HIV-1 isolate PGG12190600 from Spain polyprotein (pol) gene,
partial cds
ACCESSION HQ426760
VERSION HQ426760.1 GI:342358410
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1274)
Show all sequences for reference 1
AUTHORS de,M., Yebra,G., Martin,L., Prieto,L., Mellado,M.J., Rojo,P.,
Munoz-Fernandez,M.A., Jimenez,d., Ramos,J.T. and Holguin,A.
TITLE Drug resistance prevalence and HIV-1 variant characterization in
the naive and pretreated HIV-1-infected paediatric population in
Madrid, Spain.
JOURNAL J Antimicrob Chemother. 2011 Aug 2.
PUBMED 21810838
REFERENCE 2 (bases 1 to 1274)
Show all sequences for reference 2
AUTHORS De Mulder,M., Yebra,G., Martin,L., Holguin,A., Prieto,L.,
Mellado,M.J., Rojo,P. and Ramos,J.T.
TITLE Direct Submission
JOURNAL Submitted (21-OCT-2010) HIV-1 Molecular Epidemiology Laboratory,
Hospital Ramon y Cajal, Ctra. Colmenar Viejo Km 9.100, Madrid
28034, Spain
REFERENCE 3
Show all sequences for reference 3
AUTHORS Pagan,I., Rojas,P., Ramos,J.T. and Holguin,A.
TITLE Clinical Determinants of HIV-1B Between-Host Evolution and their
Association with Drug Resistance in Pediatric Patients.
JOURNAL PLoS. One.. 11(12); e0167383 (2016)
PUBMED 27907076
FEATURES Location/Qualifiers
source 1..1274
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="PGG12190600"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Spain"
/collection_date="2002"
/note="subtype: B"
gene <1..>1274
/gene="pol"
CDS <1..>1274
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="polyprotein"
/protein_id="AEL29290.1"
/db_xref="GI:342358411"
/translation="PQITLWQRPLVTIKVGGQLKEALLDTGADNTVLEDISLPGRWKP
KMIGGIGGFIKVRQYDQIPIEICGHKAVGTVLVGPTPVNIIGRDLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVF
AIKKKNSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSMNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFYTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCRLLRGTKALTEVV
ALTKEAELELAENREILKEPVHGVYYVQSKDL"
mat_peptide <1..297
/gene="pol"
/product="protease"
mat_peptide 298..>1274
/gene="pol"
/product="reverse transcriptase"
BASE COUNT 493 a 204 c 277 g 300 t
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa aggtaggggg gcaactaaag
61 gaagctctat tagatacagg agcagataat acagtattag aagacataag tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccca tagaaatctg tggacataaa gctgtaggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag agatctgttg actcagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccgaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gctataaaga aaaaaaacag tactaaatgg agaaagttag tagatttcag agaacttaat
541 aagagaactc aagacttttg ggaagttcaa ttaggaatac cacatcccgc agggttaaag
601 aagaaaaaat cagtaacagt attggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagacttca ggaagtatac tgcatttacc atacctagta tgaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc gatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccggacat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagacaaca tctgttgaga tggggatttt acacaccaga caaaaaacat
961 cagaaggaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattga attgggcaag tcagatttat gcagggatta aggtaagaca gttatgtaga
1141 ctccttaggg gaaccaaagc actaacagaa gtagtagcac taacaaaaga agcagagcta
1201 gaactggcag agaataggga aattctaaaa gaaccagtac atggagtgta ttatgtccaa
1261 tcaaaagact taat
//
last modified: Tue May 31 10:56 2022