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LOCUS	    HQ426760		    1274 bp    DNA     linear	VRL 08-AUG-2011
DEFINITION  HIV-1 isolate PGG12190600 from Spain polyprotein (pol) gene,
	    partial cds
ACCESSION   HQ426760
VERSION     HQ426760.1 GI:342358410
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1274)
            Show all sequences for reference 1
  AUTHORS   de,M., Yebra,G., Martin,L., Prieto,L., Mellado,M.J., Rojo,P.,
	    Munoz-Fernandez,M.A., Jimenez,d., Ramos,J.T. and Holguin,A.
  TITLE     Drug resistance prevalence and HIV-1 variant characterization in
	    the naive and pretreated HIV-1-infected paediatric population in
	    Madrid, Spain.
  JOURNAL   J Antimicrob Chemother. 2011 Aug 2.
  PUBMED    21810838
REFERENCE   2 (bases 1 to 1274)
            Show all sequences for reference 2
  AUTHORS   De Mulder,M., Yebra,G., Martin,L., Holguin,A., Prieto,L.,
	    Mellado,M.J., Rojo,P. and Ramos,J.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2010) HIV-1 Molecular Epidemiology Laboratory,
	    Hospital Ramon y Cajal, Ctra. Colmenar Viejo Km 9.100, Madrid
	    28034, Spain
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Pagan,I., Rojas,P., Ramos,J.T. and Holguin,A.
  TITLE     Clinical Determinants of HIV-1B Between-Host Evolution and their
	    Association with Drug Resistance in Pediatric Patients.
  JOURNAL   PLoS. One.. 11(12); e0167383 (2016)
  PUBMED    27907076
FEATURES             Location/Qualifiers
     source	     1..1274
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="PGG12190600"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Spain"
		     /collection_date="2002"
		     /note="subtype: B"
     gene	     <1..>1274
		     /gene="pol"
     CDS	     <1..>1274
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="polyprotein"
		     /protein_id="AEL29290.1"
		     /db_xref="GI:342358411"
		     /translation="PQITLWQRPLVTIKVGGQLKEALLDTGADNTVLEDISLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHKAVGTVLVGPTPVNIIGRDLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKNSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSMNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFYTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCRLLRGTKALTEVV
		     ALTKEAELELAENREILKEPVHGVYYVQSKDL"
     mat_peptide     <1..297
		     /gene="pol"
		     /product="protease"
     mat_peptide     298..>1274
		     /gene="pol"
		     /product="reverse transcriptase"
BASE COUNT	493 a	 204 c	  277 g    300 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa aggtaggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagataat acagtattag aagacataag tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tagaaatctg tggacataaa gctgtaggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag agatctgttg actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccgaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gctataaaga aaaaaaacag tactaaatgg agaaagttag tagatttcag agaacttaat 
     541 aagagaactc aagacttttg ggaagttcaa ttaggaatac cacatcccgc agggttaaag 
     601 aagaaaaaat cagtaacagt attggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttca ggaagtatac tgcatttacc atacctagta tgaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc gatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccggacat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagacaaca tctgttgaga tggggatttt acacaccaga caaaaaacat 
     961 cagaaggaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttat gcagggatta aggtaagaca gttatgtaga 
    1141 ctccttaggg gaaccaaagc actaacagaa gtagtagcac taacaaaaga agcagagcta 
    1201 gaactggcag agaataggga aattctaaaa gaaccagtac atggagtgta ttatgtccaa 
    1261 tcaaaagact taat
//
last modified: Tue May 31 10:56 2022


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