View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS HQ377419 2565 bp RNA linear VRL 21-JAN-2011
DEFINITION HIV-1 isolate subject_485_day1_clone 40 from Brazil envelope
glycoprotein (env) gene, complete cds
ACCESSION HQ377419
VERSION HQ377419.1 GI:317407953
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2565)
Show all sequences for reference 1
AUTHORS McNicholas,P.M., Mann,P.A., Bsc,L.W., Phd,P.Q., Lee,E.,
McCarthy,M., Shen,J., Black,T.A. and Strizki,J.M.
TITLE Mapping and Characterization of Vicriviroc Resistance Mutations
From HIV-1 Isolated from Treatment-Experienced Subjects Enrolled in
a Phase II Study (VICTOR-E1).
JOURNAL J. Acquir. Immune Defic. Syndr.. 56(3); 222-9 (2011)
PUBMED 21209592
REFERENCE 2 (bases 1 to 2565)
Show all sequences for reference 2
AUTHORS McNicholas,P.M. and Strizki,J.
TITLE Direct Submission
JOURNAL Submitted (06-OCT-2010) Department of Infectious Diseases, Merck,
2015 Galloping Hill Road, Kenilworth, NJ 07033, USA
FEATURES Location/Qualifiers
source 1..2565
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="subject_485_day1_clone 40"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Brazil"
/collection_date="Oct-2006"
gene 1..2565
/gene="env"
CDS 1..2565
/gene="env"
/note="gp160"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADV17510.1"
/db_xref="GI:317407954"
/translation="MRVRGMQRNWQHLGTWGLLFLGVLIICKATQQMWVTVYYGVPVW
KEATTILFCASDAKAYDTEVHNVWATHACVPTDPNPQEIDLVNVTENFNMWKNNMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLDCKDVNISNSNSTVNITNVNTTSWQRMQAGEI
KNCSFNVSTNIRDKVQTEYALFYNLDVVKIEGGHNTSYRLISCNTSVLTQACPKVSFE
PIPIHYCAPAGFAILKCKDKEFNGSGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEG
VVIRSENFTNNAKTIIVQLNDSVVINCTRPNNNTRKSIHIGPGSAFYATGEIIGDMRQ
AHCNISGIKWNNTLKQISTKLRKQFNKTIVFNHSSGGDPEVVMHSFICGGEFFYCDTT
QLFNSTWNDTTGSIHTNETITLRCRIKQIVNMWQGVGKAMYAPPIRGQINCTSNITGL
LLTRDGGTNGTTETFRPQGGNMKDNWRSELYKYKVVKIEPLGIAPTKAKRRVVQREKR
AIGVIGAMFLGFLGTAGSTMGAASLTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQL
TVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICATAVPWNTSWSNKSYNQIWGNM
TWMEWEREIDNYTGLIYSLIEESQIQQEKNEQDLLSLDQWASLWNWFDISNWLSYIKI
FIMIVGGLIGLRIVFAVLSIINRVRQGYSPLSFQTHLPARRGPDRPEGTEEDGGDRDR
DTSRPLVDGFLAIIWVDLRSLCLFSYHRLRDLLLIVTRTVELLGRRGWELLKYCWNIL
QYWSQELKNSAISLLNTTAVAVAEGTDRIIEALQIIGRAILNIPRRIRQGLERALL"
BASE COUNT 900 a 446 c 593 g 626 t
ORIGIN
1 atgagagtga gggggatgca gaggaattgg cagcacttgg ggacatgggg cctcttattc
61 ttgggggtgt taataatatg taaggctaca caacagatgt gggttacagt ctattatggg
121 gtacctgtgt ggaaagaagc aaccactatt ctattttgtg catcagatgc taaagcatat
181 gatacagagg tacataatgt ttgggccaca catgcctgtg tacccacaga ccccaaccca
241 caagaaatag acttggtaaa tgtgacagaa aattttaata tgtggaaaaa taacatggta
301 gaacaaatgc atgaggatat aattagttta tgggatcaaa gcctaaaacc atgtgtaaaa
361 ttaaccccac tctgtgttac tttagattgc aaggatgtga atattagtaa cagcaatagt
421 actgtcaaca ttactaacgt gaatactact agctggcaaa gaatgcaagc aggagaaata
481 aaaaattgct ctttcaatgt tagtacaaac ataagagata aggtacagac agaatatgca
541 cttttttata accttgatgt agtaaaaata gaaggggggc ataatactag ctataggttg
601 ataagttgta acacctcagt ccttacacag gcctgtccaa aagtatcctt tgagccaatt
661 cccatacatt attgtgcccc ggctggtttt gcgattctaa agtgtaaaga taaggagttc
721 aatggatcag gaccatgtac aaatgtcagc acagtacaat gtacacatgg aattaggcca
781 gtagtgtcaa ctcaactgct actaaatggc agtctagcag aagaaggggt agtaattaga
841 tctgaaaatt tcacaaacaa tgctaaaacc ataatagtac agctgaatga ctctgtagta
901 attaattgta caagacctaa caacaataca agaaagagca tacatatagg accaggcagt
961 gcattttatg caacaggaga aataatagga gatatgagac aagcacattg taacattagt
1021 ggaataaaat ggaacaacac attaaaacaa ataagtacaa agctaagaaa acaatttaat
1081 aaaacaatag tctttaatca ctcctcagga ggggacccag aagttgtaat gcacagtttt
1141 atttgtggag gggaattttt ctactgtgat acaacacaac tgttcaatag tacttggaat
1201 gatactacag ggtcaattca cactaatgaa acgatcacac tccgatgcag aataaaacaa
1261 attgtaaaca tgtggcaggg agtaggaaaa gcaatgtatg cccctcccat cagaggacaa
1321 attaactgta catcaaatat tacagggctg ctattaacaa gagatggtgg tacgaacggg
1381 accaccgaga cctttagacc tcaaggagga aatatgaaag acaattggag aagtgaatta
1441 tataaatata aagtagtaaa aattgaacca ttaggaatag cacccaccaa ggcaaagcga
1501 agagtggtgc aaagagaaaa aagagcaata ggggtaatag gagctatgtt ccttgggttc
1561 ttgggaacag caggaagcac tatgggcgca gcgtcactga cgctgacggt acaggccaga
1621 caattattgt ctggtatagt gcaacagcag aacaatttgc tgagagctat tgaggcgcaa
1681 caacatctgt tgcaactcac agtctggggc atcaagcaac tccaggcaag agtcctggct
1741 gtggaaagat acctaaggga tcaacagctc ctgggaattt ggggttgctc tggaaagctc
1801 atttgcgcca ctgctgtgcc ttggaatact agttggagta ataaatctta taatcagatt
1861 tggggaaata tgacatggat ggaatgggaa agagaaattg ataattacac aggcttaata
1921 tacagcttaa ttgaagaatc gcaaatccaa caagaaaaga atgaacaaga cttattgtca
1981 ttagatcaat gggcaagttt gtggaattgg tttgacatat caaactggct atcgtatata
2041 aaaatattca taatgatagt agggggctta ataggtttaa gaatagtttt tgctgtactt
2101 tctataataa atagagttag gcagggatac tcacccttat cgttccagac ccacctccca
2161 gccaggaggg gacccgacag gcccgaagga accgaagaag acggtggaga cagagacaga
2221 gacacatcca gaccattagt ggatggattc ttagcaatca tctgggtcga cctgcggagc
2281 ctgtgcctct tcagctacca ccgcttgaga gacttactct tgattgtaac gaggactgtg
2341 gaactgctgg gacgcagggg gtgggaactc ctcaaatatt gctggaacat cctacagtat
2401 tggagtcagg aactaaagaa tagtgctatt agcttgctta ataccacagc agtagcagtg
2461 gctgagggga cagacagaat tatagaagct ttgcaaataa ttggaagagc tatcctcaat
2521 atacctagaa gaataagaca gggtttggaa agggctttgc tataa
//
last modified: Tue May 31 10:56 2022