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LOCUS	    HQ186863		    2499 bp    DNA     linear	VRL 27-AUG-2011
DEFINITION  Simian immunodeficiency virus isolate C_AX89_S_w2_p1B8 envelope
	    glycoprotein (env), rev protein (rev), tat protein (tat), and nef
	    protein (nef) genes, partial cds
ACCESSION   HQ186863
VERSION     HQ186863.1 GI:306022621
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2499)
            Show all sequences for reference 1
  AUTHORS   Whitney,J.B., Hraber,P.T., Luedemann,C., Giorgi,E.E., Daniels,M.G.,
	    Bhattacharya,T., Rao,S.S., Mascola,J.R., Nabel,G.J., Korber,B.T.
	    and Letvin,N.L.
  TITLE     Genital tract sequestration of SIV following acute infection.
  JOURNAL   PLoS. Pathog.. 7(2); e1001293 (2011)
  PUBMED    21379569
REFERENCE   2 (bases 1 to 2499)
            Show all sequences for reference 2
  AUTHORS   Hraber,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2010) Los Alamos National Laboratory, Theoretical
	    Biology and Biophysics (T10), MSK710, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence Name C_AX89_S_w2_p1B8 Sample
	    tissue seminal plasma Patient code AX89 Sample Timepoint 14 dpi
	    Viral Load NA Isolate name SIVmac251 DBID 918976711
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2499
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="C_AX89_S_w2_p1B8"
		     /db_xref="taxon:11723"
		     /lab_host="IV-infected Macaca mulatta"
		     /note="sham-vaccinated control; Mamu A01-,A02-,B17-,B08-"
     gene	     1..>2499
		     /gene="env"
     CDS	     1..>2499
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADM80660.1"
		     /db_xref="GI:306022624"
		     /translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
		     ATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
		     KLSPLCITMRCNKSETDKWGLTKSSTITTTAPTTPNTTSTKSINMVNETSSCIVHDNC
		     TGLEQEQMIGCKFNMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSI
		     IQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTST
		     WFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIMSGLVFH
		     SQPVNERPNQAWCWFGGNWKDAIKEVKQTIVKHPRYTGINNTDKINLTAPRGGDPEVT
		     FMWTNCRGEFLYCKMNWFLNWVEDRDVTTQRPKERHRRNYVPCHIRQIINTWHKVGKN
		     VYLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPI
		     GLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQ
		     QQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTV
		     PWPNASLTPNWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFG
		     NWFDLASWIKYIQYGVYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTHI
		     QQDPALPTREGKEGDGGESGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRAY
		     QILQPILQRLSAVLRRIREVLRTELTYLQYGWSYF"
     gene	     <2212..2465
		     /gene="rev"
     CDS	     <2212..2465
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ADM80659.1"
		     /db_xref="GI:306022623"
		     /translation="PYPTGPGTANQRRQRRRRWRKRWQQLLALADRIYSFPDPPTDTP
		     LDLAIQQLQNLAIESIPDPPTNTPEALCGPTENSRSPQD"
     gene	     <2212..2308
		     /gene="tat"
     CDS	     <2212..2308
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ADM80658.1"
		     /db_xref="GI:306022622"
		     /translation="PISNRTRHCQPEKAKKETVEKAVATAPGLGR"
     gene	     2483..>2499
		     /gene="nef"
     CDS	     2483..>2499
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ADM80661.1"
		     /db_xref="GI:306022625"
		     /translation="MGGAIS"
BASE COUNT	805 a	 470 c	  587 g    637 t
ORIGIN
       1 atgggatgtc ttgggaatca gctgcttatc gccatcttgc ttttaagtgt ctatgggatc 
      61 tattgtactc aatatgtcac agtcttttat ggtgtaccag cttggaggaa tgcgacaatt 
     121 cccctcttct gtgcaaccaa gaatagggat acttggggaa caactcagtg cctaccagat 
     181 aatggtgatt attcagaatt ggcccttaat gttacagaaa gctttgatgc ttgggagaat 
     241 acagtcacag aacaggcaat agaggatgta tggcaactct ttgagacctc aataaagcct 
     301 tgtgtaaaat tatccccatt atgcattact atgagatgca ataaaagtga gacagataaa 
     361 tggggattga caaaatcatc aacaataaca acaacagcac caacaacacc aaatacaaca 
     421 tcaacaaagt caataaacat ggtcaatgag actagttctt gtatagttca tgataattgc 
     481 acaggcttgg aacaagagca aatgataggc tgtaaattca acatgacagg gttaaaaaga 
     541 gacaagacaa aggagtacaa tgaaacttgg tactctacag atttggtttg tgaacaaggg 
     601 aatagcactg ataatgaaag tagatgttac atgaatcact gtaacacttc tattatccaa 
     661 gagtcttgtg acaagcatta ttgggatact attagattta ggtattgtgc acctccaggt 
     721 tatgctttgc ttagatgtaa tgacacaaat tattcaggct ttatgcctaa atgttctaag 
     781 gtggtggtct cttcatgcac aaggatgatg gagacacaga cttctacttg gtttggcttt 
     841 aatggaacta gagcagaaaa tagaacttat atttactggc atggtaggga taataggact 
     901 ataattagtt taaataagta ttataatcta acaatgaaat gtagaagacc aggaaataag 
     961 acagttttgc cagtcaccat tatgtctgga ttggttttcc actcacaacc agtcaatgag 
    1021 aggccaaacc aggcatggtg ttggtttgga ggaaattgga aggatgcaat aaaagaggtg 
    1081 aagcagacca ttgtcaaaca tcccaggtat actggaatta acaatactga taaaatcaat 
    1141 ttgacggctc ctagaggagg agatccggaa gttaccttca tgtggacaaa ttgcagagga 
    1201 gagtttctct actgtaaaat gaattggttt ctaaattggg tagaggatag ggatgtaact 
    1261 acccagaggc caaaggaacg gcatagaagg aattacgtgc cgtgtcatat tagacaaata 
    1321 atcaacactt ggcataaagt aggcaaaaat gtttatttgc ctccaagaga gggagacctc 
    1381 acgtgtaact ccacagtgac cagtctcata gcaaacatag attggactga tggaaaccaa 
    1441 actaatatca ccatgagtgc agaggtggca gaactgtatc gattggagtt gggagattat 
    1501 aaattagtag agatcactcc gattggcttg gcccccacag atgtgaagag gtacactact 
    1561 ggtggcacct caagaaataa aagaggggtc tttgtgctag ggttcttggg ttttctcgca 
    1621 acggcaggtt ctgcaatggg cgcggcgtcg ttgacgctaa ccgctcagtc ccggacttta 
    1681 ttggctggga tagtgcagca acagcaacag ctgttggacg tggtcaagag acaacaagaa 
    1741 ttgttgcgac tgaccgtctg gggaacaaag aacctccaga ctagggtcac tgccatcgag 
    1801 aagtacttaa aggaccaggc gcagctgaat gcttggggat gtgcgtttag acaagtctgc 
    1861 cacactactg taccatggcc aaatgcaagt ctaacaccaa attggaacaa tgatacttgg 
    1921 caagagtggg agcgaaaggt tgacttcttg gaggaaaata taacagccct cctagaagag 
    1981 gcacaaattc aacaagagaa gaacatgtat gaattacaaa agttgaatag ctgggatgtg 
    2041 tttggcaatt ggtttgacct tgcttcttgg ataaagtata tacaatatgg agtttatata 
    2101 gttgtaggag taatactgtt aagaatagtg atctatatag tacaaatgct agctaagtta 
    2161 aggcaagggt ataggccagt gttctcttcc ccaccctctt atttccagca gacccatatc 
    2221 caacaggacc cggcactgcc aaccagagaa ggcaaagaag gagacggtgg agaaagcggt 
    2281 ggcaacagct cctggccttg gcagatagaa tatattcatt tcctgatccg ccaactgata 
    2341 cgcctcttga cttggctatt cagcaactgc agaaccttgc tatcgagagc ataccagatc 
    2401 ctccaaccaa tactccagag gctctctgcg gtcctacgga gaattcgaga agtcctcagg 
    2461 actgaactga cctacctaca atatgggtgg agctatttc
//
last modified: Tue May 31 10:56 2022


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