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LOCUS HQ186809 2497 bp DNA linear VRL 27-AUG-2011
DEFINITION Simian immunodeficiency virus isolate C_AX89_B_w16_p1F7 env
pseudogene, partial sequence; and rev protein (rev), tat protein
(tat), and nef protein (nef) genes, partial cds
ACCESSION HQ186809
VERSION HQ186809.1 GI:306022372
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2497)
Show all sequences for reference 1
AUTHORS Whitney,J.B., Hraber,P.T., Luedemann,C., Giorgi,E.E., Daniels,M.G.,
Bhattacharya,T., Rao,S.S., Mascola,J.R., Nabel,G.J., Korber,B.T.
and Letvin,N.L.
TITLE Genital tract sequestration of SIV following acute infection.
JOURNAL PLoS. Pathog.. 7(2); e1001293 (2011)
PUBMED 21379569
REFERENCE 2 (bases 1 to 2497)
Show all sequences for reference 2
AUTHORS Hraber,P.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2010) Los Alamos National Laboratory, Theoretical
Biology and Biophysics (T10), MSK710, Los Alamos, NM 87545, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence Name C_AX89_B_w16_p1F7 Sample
tissue blood plasma Patient code AX89 Sample Timepoint 112 dpi
Viral Load 249,772 Isolate name SIVmac251 DBID 119030627
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2497
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="C_AX89_B_w16_p1F7"
/db_xref="taxon:11723"
/lab_host="IV-infected Macaca mulatta"
/note="sham-vaccinated control; Mamu A01-,A02-,B17-,B08-"
gene 1..>2497
/gene="env"
/pseudo="env"
CDS 1..>2497
/gene="env"
/pseudo="env"
/codon_start="1"
/transl_table="1"
gene <2210..2463
/gene="rev"
CDS <2210..2463
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ADM80464.1"
/db_xref="GI:306022374"
/translation="LYPTGPGTANQRRQRRRRWRRRWQQLLALADRIYSFPDPPTDTP
LDLAIQQLQNLAIESIPDPPTNTPEALCGPTENSRSPQD"
gene <2210..2306
/gene="tat"
CDS <2210..2306
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ADM80463.1"
/db_xref="GI:306022373"
/translation="LIPNRTRHCQPEKAKKETVEKAVATAPGLGR"
gene 2481..>2497
/gene="nef"
CDS 2481..>2497
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="ADM80465.1"
/db_xref="GI:306022375"
/translation="MGGAIS"
BASE COUNT 802 a 473 c 585 g 637 t
ORIGIN
1 atgggatgtc ttgggaatca gctgcttatc gccatcttgc ttttaagtgt ctatgggatc
61 tattgtactc aatatgtcac agtcttttat ggtgtaccag cttggaggaa tgcgacaatt
121 cccctcttct gtgcaaccaa gaatagggat acttggggaa caactcagtg cctaccagat
181 aatggtgatt attcagaatt ggcccttaat gttacagaaa gctttgatgc ttgggagaat
241 acagtcacag aacaggcaat agaggatgta tggcaactct ttgagacctc aataaagcct
301 tgtgtaaaat tatccccatt atgcattact atgagatgca ataaaagtga gacagataaa
361 tggggattga caaaatcatc aacaataaca acaacagcac caacaacacc aaatacaaca
421 tcaacaaagt caatagacat ggtcaatgag actagttctt gtatagttca tgataattgc
481 acaggcttgg aacaagagca aatgataggc tgtaaattca acatgacagg gttaaaaaga
541 gacaagacaa aggagtacaa tgaaacttgg tactctacag atttggtttg tgaacaaggg
601 aatagcactg ataatgaaag tagatgttac atgaatcact gtaacacttc tattatccaa
661 gagtcttgtg acaagcatta ttgggatact attagattta ggtattgtgc acctccaggt
721 tatgctttgc ttagatgtaa tgacacaaat tattcaggct ttatgcctaa atgttctaag
781 gtggtggtct cttcatgcac aaggatgatg gagacacaga cttctacttg gtttggcttt
841 aatggaacta gagcagaaaa tagaacttat atttactggc atggtaggga taataggact
901 ataattagtt taaataagta ttataatcta acaatgaaat gtagaagacc aggaaataag
961 acagttttgc cagtcaccat tatgtctgga ttggttttcc actcacaacc agtcaatgag
1021 aggccaaacc aggcatggtg ttggtttgga ggaaattgga aggatgcaat aaaagaggtg
1081 aagcagacca ttgtcaaaca tcccaggtat actggaacta acaatactga taaaatcaat
1141 ttgacggctc ctagaggagg agatccggaa gttaccttca tgtggacaaa ttgcagaaga
1201 atttctctac tgtaaaatga attggtttct aaattgggta gaagataggg atgtaactac
1261 ccaggggcca aaggaacggc atagaaggaa ttacgtgccg tgtcatatta gacaaataat
1321 caacacttgg cataaagtag gcaaaaatgt ttatttgcct ccaagagagg gagacctcac
1381 gtgtaactcc acagtgacca gtctcatagc aaacatagat tggactgatg gaaaccaaac
1441 taatatcacc atgagtgcag aggtggcaga actgtatcga ttggagttgg gagattataa
1501 attagtagag atcaccccga ttggcttggc ccccacagat gtgaagaggt accctactgg
1561 tggcccctca agaaataaaa taggggtctt tgtgctaggg ttcttgggtt ttctcgcaac
1621 ggcaggttct gcaatgggcg cggcgtcgtt gacgctgacc gctcagtccc ggactttatt
1681 ggctgggata gtgcagcaac agcaacagct gttggacgtg gtcaagagac aacaagaatt
1741 gttgcgactg accgtctggg gaacaaagaa cctccagact agggtcgctg ccatcgagaa
1801 gtacttaaag gaccaggcgc agctaaatgc ttggggatgt gcgtttagac aagtctgcca
1861 cactactgta ccatggccaa atgcaagtct aacaccaaat tggaacaatg atacttggca
1921 agagtgggag cgaaaggttg acttcttgga ggaaaatata acagccctcc tagaagaggc
1981 acaaattcaa caagagaaga acatgtatga attacaaaag ttaaatagct gggatgtgtt
2041 tggcaattgg tttgaccttg cttcttggat aaagtatata caatatggag tttatatagt
2101 tgtaggagta atactgttaa gaatagtgat ctatatagta caaatgctag ctaagttaag
2161 gcaagggtat aggccagtgt tctcttcccc accctcttat ttccagcaga cttataccca
2221 acaggacccg gcactgccaa ccagagaagg caaagaagga gacggtggag aaggcggtgg
2281 caacagctcc tggccttggc agatagaata tattcatttc ctgatccgcc aactgatacg
2341 cctcttgact tggctattca gcaactgcag aaccttgcta tcgagagcat accagatcct
2401 ccaaccaata ctccagaggc tctctgcggt cctacggaga attcgagaag tcctcaggac
2461 tgaactgacc tacctacaat atgggtggag ctatttc
//
last modified: Tue May 31 10:56 2022