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LOCUS	    HQ186809		    2497 bp    DNA     linear	VRL 27-AUG-2011
DEFINITION  Simian immunodeficiency virus isolate C_AX89_B_w16_p1F7 env
	    pseudogene, partial sequence; and rev protein (rev), tat protein
	    (tat), and nef protein (nef) genes, partial cds
ACCESSION   HQ186809
VERSION     HQ186809.1 GI:306022372
KEYWORDS    .
SOURCE	    Simian immunodeficiency virus (SIV)
  ORGANISM  Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2497)
            Show all sequences for reference 1
  AUTHORS   Whitney,J.B., Hraber,P.T., Luedemann,C., Giorgi,E.E., Daniels,M.G.,
	    Bhattacharya,T., Rao,S.S., Mascola,J.R., Nabel,G.J., Korber,B.T.
	    and Letvin,N.L.
  TITLE     Genital tract sequestration of SIV following acute infection.
  JOURNAL   PLoS. Pathog.. 7(2); e1001293 (2011)
  PUBMED    21379569
REFERENCE   2 (bases 1 to 2497)
            Show all sequences for reference 2
  AUTHORS   Hraber,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-AUG-2010) Los Alamos National Laboratory, Theoretical
	    Biology and Biophysics (T10), MSK710, Los Alamos, NM 87545, USA
COMMENT     Annotation information was provided by the author. Some of the
	    information does not have GenBank feature identifiers and is being
	    provided in the comment section. Information in this section is
	    searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
	    ##HIVDataBaseData-START## Sequence Name C_AX89_B_w16_p1F7 Sample
	    tissue blood plasma Patient code AX89 Sample Timepoint 112 dpi
	    Viral Load 249,772 Isolate name SIVmac251 DBID 119030627
	    ##HIVDataBaseData-END##
FEATURES             Location/Qualifiers
     source	     1..2497
		     /organism="Simian immunodeficiency virus"
		     /proviral="Simian immunodeficiency virus"
		     /mol_type="genomic DNA"
		     /isolate="C_AX89_B_w16_p1F7"
		     /db_xref="taxon:11723"
		     /lab_host="IV-infected Macaca mulatta"
		     /note="sham-vaccinated control; Mamu A01-,A02-,B17-,B08-"
     gene	     1..>2497
		     /gene="env"
		     /pseudo="env"
     CDS	     1..>2497
		     /gene="env"
		     /pseudo="env"
		     /codon_start="1"
		     /transl_table="1"
     gene	     <2210..2463
		     /gene="rev"
     CDS	     <2210..2463
		     /gene="rev"
		     /codon_start="3"
		     /transl_table="1"
		     /product="rev protein"
		     /protein_id="ADM80464.1"
		     /db_xref="GI:306022374"
		     /translation="LYPTGPGTANQRRQRRRRWRRRWQQLLALADRIYSFPDPPTDTP
		     LDLAIQQLQNLAIESIPDPPTNTPEALCGPTENSRSPQD"
     gene	     <2210..2306
		     /gene="tat"
     CDS	     <2210..2306
		     /gene="tat"
		     /codon_start="2"
		     /transl_table="1"
		     /product="tat protein"
		     /protein_id="ADM80463.1"
		     /db_xref="GI:306022373"
		     /translation="LIPNRTRHCQPEKAKKETVEKAVATAPGLGR"
     gene	     2481..>2497
		     /gene="nef"
     CDS	     2481..>2497
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ADM80465.1"
		     /db_xref="GI:306022375"
		     /translation="MGGAIS"
BASE COUNT	802 a	 473 c	  585 g    637 t
ORIGIN
       1 atgggatgtc ttgggaatca gctgcttatc gccatcttgc ttttaagtgt ctatgggatc 
      61 tattgtactc aatatgtcac agtcttttat ggtgtaccag cttggaggaa tgcgacaatt 
     121 cccctcttct gtgcaaccaa gaatagggat acttggggaa caactcagtg cctaccagat 
     181 aatggtgatt attcagaatt ggcccttaat gttacagaaa gctttgatgc ttgggagaat 
     241 acagtcacag aacaggcaat agaggatgta tggcaactct ttgagacctc aataaagcct 
     301 tgtgtaaaat tatccccatt atgcattact atgagatgca ataaaagtga gacagataaa 
     361 tggggattga caaaatcatc aacaataaca acaacagcac caacaacacc aaatacaaca 
     421 tcaacaaagt caatagacat ggtcaatgag actagttctt gtatagttca tgataattgc 
     481 acaggcttgg aacaagagca aatgataggc tgtaaattca acatgacagg gttaaaaaga 
     541 gacaagacaa aggagtacaa tgaaacttgg tactctacag atttggtttg tgaacaaggg 
     601 aatagcactg ataatgaaag tagatgttac atgaatcact gtaacacttc tattatccaa 
     661 gagtcttgtg acaagcatta ttgggatact attagattta ggtattgtgc acctccaggt 
     721 tatgctttgc ttagatgtaa tgacacaaat tattcaggct ttatgcctaa atgttctaag 
     781 gtggtggtct cttcatgcac aaggatgatg gagacacaga cttctacttg gtttggcttt 
     841 aatggaacta gagcagaaaa tagaacttat atttactggc atggtaggga taataggact 
     901 ataattagtt taaataagta ttataatcta acaatgaaat gtagaagacc aggaaataag 
     961 acagttttgc cagtcaccat tatgtctgga ttggttttcc actcacaacc agtcaatgag 
    1021 aggccaaacc aggcatggtg ttggtttgga ggaaattgga aggatgcaat aaaagaggtg 
    1081 aagcagacca ttgtcaaaca tcccaggtat actggaacta acaatactga taaaatcaat 
    1141 ttgacggctc ctagaggagg agatccggaa gttaccttca tgtggacaaa ttgcagaaga 
    1201 atttctctac tgtaaaatga attggtttct aaattgggta gaagataggg atgtaactac 
    1261 ccaggggcca aaggaacggc atagaaggaa ttacgtgccg tgtcatatta gacaaataat 
    1321 caacacttgg cataaagtag gcaaaaatgt ttatttgcct ccaagagagg gagacctcac 
    1381 gtgtaactcc acagtgacca gtctcatagc aaacatagat tggactgatg gaaaccaaac 
    1441 taatatcacc atgagtgcag aggtggcaga actgtatcga ttggagttgg gagattataa 
    1501 attagtagag atcaccccga ttggcttggc ccccacagat gtgaagaggt accctactgg 
    1561 tggcccctca agaaataaaa taggggtctt tgtgctaggg ttcttgggtt ttctcgcaac 
    1621 ggcaggttct gcaatgggcg cggcgtcgtt gacgctgacc gctcagtccc ggactttatt 
    1681 ggctgggata gtgcagcaac agcaacagct gttggacgtg gtcaagagac aacaagaatt 
    1741 gttgcgactg accgtctggg gaacaaagaa cctccagact agggtcgctg ccatcgagaa 
    1801 gtacttaaag gaccaggcgc agctaaatgc ttggggatgt gcgtttagac aagtctgcca 
    1861 cactactgta ccatggccaa atgcaagtct aacaccaaat tggaacaatg atacttggca 
    1921 agagtgggag cgaaaggttg acttcttgga ggaaaatata acagccctcc tagaagaggc 
    1981 acaaattcaa caagagaaga acatgtatga attacaaaag ttaaatagct gggatgtgtt 
    2041 tggcaattgg tttgaccttg cttcttggat aaagtatata caatatggag tttatatagt 
    2101 tgtaggagta atactgttaa gaatagtgat ctatatagta caaatgctag ctaagttaag 
    2161 gcaagggtat aggccagtgt tctcttcccc accctcttat ttccagcaga cttataccca 
    2221 acaggacccg gcactgccaa ccagagaagg caaagaagga gacggtggag aaggcggtgg 
    2281 caacagctcc tggccttggc agatagaata tattcatttc ctgatccgcc aactgatacg 
    2341 cctcttgact tggctattca gcaactgcag aaccttgcta tcgagagcat accagatcct 
    2401 ccaaccaata ctccagaggc tctctgcggt cctacggaga attcgagaag tcctcaggac 
    2461 tgaactgacc tacctacaat atgggtggag ctatttc
//
last modified: Tue May 31 10:56 2022


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