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LOCUS HQ186801 2499 bp DNA linear VRL 27-AUG-2011
DEFINITION Simian immunodeficiency virus isolate C_AX89_B_w16_p1A7 envelope
glycoprotein (env), rev protein (rev), tat protein (tat), and nef
protein (nef) genes, partial cds
ACCESSION HQ186801
VERSION HQ186801.1 GI:306022333
KEYWORDS .
SOURCE Simian immunodeficiency virus (SIV)
ORGANISM Simian immunodeficiency virus Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2499)
Show all sequences for reference 1
AUTHORS Whitney,J.B., Hraber,P.T., Luedemann,C., Giorgi,E.E., Daniels,M.G.,
Bhattacharya,T., Rao,S.S., Mascola,J.R., Nabel,G.J., Korber,B.T.
and Letvin,N.L.
TITLE Genital tract sequestration of SIV following acute infection.
JOURNAL PLoS. Pathog.. 7(2); e1001293 (2011)
PUBMED 21379569
REFERENCE 2 (bases 1 to 2499)
Show all sequences for reference 2
AUTHORS Hraber,P.
TITLE Direct Submission
JOURNAL Submitted (25-AUG-2010) Los Alamos National Laboratory, Theoretical
Biology and Biophysics (T10), MSK710, Los Alamos, NM 87545, USA
COMMENT Annotation information was provided by the author. Some of the
information does not have GenBank feature identifiers and is being
provided in the comment section. Information in this section is
searchable in HIV Database at Los Alamos (www.hiv.lanl.gov).;
##HIVDataBaseData-START## Sequence Name C_AX89_B_w16_p1A7 Sample
tissue blood plasma Patient code AX89 Sample Timepoint 112 dpi
Viral Load 249,772 Isolate name SIVmac251 DBID 3265886207
##HIVDataBaseData-END##
FEATURES Location/Qualifiers
source 1..2499
/organism="Simian immunodeficiency virus"
/proviral="Simian immunodeficiency virus"
/mol_type="genomic DNA"
/isolate="C_AX89_B_w16_p1A7"
/db_xref="taxon:11723"
/lab_host="IV-infected Macaca mulatta"
/note="sham-vaccinated control; Mamu A01-,A02-,B17-,B08-"
gene 1..>2499
/gene="env"
CDS 1..>2499
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADM80434.1"
/db_xref="GI:306022336"
/translation="MGCLGNQLLIAILLLSVYGIYCTQYVTVFYGVPAWRNATIPLFC
ATKNRDTWGTTQCLPDNGDYSELALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCV
KLSPLCITMRCNKSETDKWGLTKSSTITTTAPTTPNTTSTKSIDMVNETSSCIVHDNC
TGLEQEQMIGCKFNMTGLKRDKTKEYNETWYSTDLVCEQGNSTDNESRCYMNHCNTSI
IQESCDKHYWDTIRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCPRMMETQTST
WFGFNGTRAENRTYIYWHGRDNRTIISLNKYYNLTMKCRRPGNKTVLPVTIKYGLVFH
SQPVNERPNQAWCWFGGNWKDAIKEVKQTIVKHPRYTGINNTDKINLTAPRGGDPEVT
FMWTNCRGEFLYCKMNWFLNWVEDRDVTTQRPKERHRRNYVPYHIRQIINTWHKVGKN
VYLPPREGDLTCNSTVTSLIANIDWTDGNQTNITMSAEVAELYRLELGDYKLVEITPI
GLAPTDVKRYTTGGTSRNKRGVFVLGFLGFLATAGSAMGAASLTLTAQSRTLLAGIVQ
QQQQLLDVVKRQQELLRLTVWGTKNLQTRVTAIEKYLKDQAQLNAWGCAFRQVCHTTV
PWPNASLTPNWNNDTWQEWERKVDFLEENITALLEEAQIQQEKNMYELQKLNSWDVFG
NWFDLASWIKYIQYGVYIVVGVILLRIVIYIVQMLAKLRQGYRPVFSSPPSYFQQTYT
QQDPALPTREGKEGDGGEGGGNSSWPWQIEYIHFLIRQLIRLLTWLFSNCRTLLSRAY
QILQPILQRLSAVLRRIREVLRTELTYLQYGWSYF"
gene <2212..2465
/gene="rev"
CDS <2212..2465
/gene="rev"
/codon_start="3"
/transl_table="1"
/product="rev protein"
/protein_id="ADM80433.1"
/db_xref="GI:306022335"
/translation="LYPTGPGTANQRRQRRRRWRRRWQQLLALADRIYSFPDPPTDTP
LDLAIQQLQNLAIESIPDPPTNTPEALCGPTENSRSPQD"
gene <2212..2308
/gene="tat"
CDS <2212..2308
/gene="tat"
/codon_start="2"
/transl_table="1"
/product="tat protein"
/protein_id="ADM80432.1"
/db_xref="GI:306022334"
/translation="LIPNRTRHCQPEKAKKETVEKAVATAPGLGR"
gene 2483..>2499
/gene="nef"
CDS 2483..>2499
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="ADM80435.1"
/db_xref="GI:306022337"
/translation="MGGAIS"
BASE COUNT 808 a 469 c 585 g 637 t
ORIGIN
1 atgggatgtc ttgggaatca gctgcttatc gccatcttgc ttttaagtgt ctatgggatc
61 tattgtactc aatatgtcac agtcttttat ggtgtaccag cttggaggaa tgcgacaatt
121 cccctcttct gtgcaaccaa gaatagggat acttggggaa caactcagtg cctaccagat
181 aatggtgatt attcagaatt ggcccttaat gttacagaaa gctttgatgc ttgggagaat
241 acagtcacag aacaggcaat agaggatgta tggcaactct ttgagacctc aataaagcct
301 tgtgtaaaat tatccccatt atgcattact atgagatgca ataaaagtga gacagataaa
361 tggggattga caaaatcatc aacaataaca acaacagcac caacaacacc aaatacaaca
421 tcaacaaagt caatagacat ggtcaatgag actagttctt gtatagttca tgataattgc
481 acaggcttgg aacaagagca aatgataggc tgtaaattca acatgacagg gttaaaaaga
541 gacaagacaa aggagtacaa tgaaacttgg tactctacag atttagtttg tgaacaaggg
601 aatagcactg ataatgaaag tagatgttac atgaatcact gtaacacttc tattatccaa
661 gagtcttgtg acaagcatta ttgggatact attagattta ggtattgtgc acctccaggt
721 tatgctttgc ttagatgtaa tgacacaaat tattcaggct ttatgcctaa atgttctaag
781 gtggtggtct cttcatgccc aaggatgatg gagacacaaa cttctacttg gtttggcttt
841 aatggaacta gagcagaaaa tagaacttat atttactggc atggtaggga taataggact
901 ataattagtt taaataagta ttataatcta acaatgaaat gtagaagacc aggaaataag
961 acagttttgc cagtcaccat taagtatgga ttggttttcc actcacaacc agtcaatgag
1021 aggccaaacc aggcatggtg ttggtttgga ggaaattgga aggatgcaat aaaagaggtg
1081 aagcagacca ttgtcaaaca tcccaggtat actggaatta acaatactga taaaatcaat
1141 ttgacggctc ctagaggagg agatccggaa gttaccttca tgtggacaaa ttgcagagga
1201 gaatttctct actgtaaaat gaattggttt ctaaattggg tagaggatag ggatgtaact
1261 acccagaggc caaaggaacg gcatagaagg aattacgtgc cgtatcatat tagacaaata
1321 atcaacactt ggcataaagt aggcaaaaat gtttatttgc ctccaagaga gggagacctc
1381 acgtgtaact ccacagtgac cagtctcata gcaaacatag attggactga tggaaaccaa
1441 actaatatca ccatgagtgc agaggtggca gaactgtatc gattggagtt gggagattat
1501 aaattagtag agatcactcc gattggcttg gcccccacag atgtgaagag gtacactact
1561 ggtggcacct caagaaataa aagaggggtc tttgtgctag ggttcttggg ttttctcgca
1621 acggcaggtt ctgcaatggg cgcggcgtcg ttgacgctga ccgctcagtc ccggacttta
1681 ttggctggga tagtgcagca acagcaacag ctgttggacg tggtcaagag acaacaagaa
1741 ttgttgcgac tgaccgtctg gggaacaaag aacctccaga ctagggtcac tgccatcgag
1801 aaatacttaa aggaccaggc gcagctgaat gcttggggat gtgcgtttag acaagtctgc
1861 cacactactg taccatggcc aaatgcaagt ctaacaccaa attggaacaa tgatacttgg
1921 caagagtggg agcgaaaggt tgacttcttg gaggaaaata taacagccct cctagaagag
1981 gcacaaattc aacaagagaa gaacatgtat gaattacaaa agttgaatag ctgggatgtg
2041 tttggcaatt ggtttgacct tgcttcttgg ataaagtata tacaatatgg agtttatata
2101 gttgtaggag taatactgtt aagaatagtg atctatatag tacaaatgct agctaagtta
2161 aggcaagggt ataggccagt gttctcttcc ccaccctctt atttccagca gacttatacc
2221 caacaggacc cggcactgcc aaccagagaa ggcaaagaag gagacggtgg agaaggcggt
2281 ggcaacagct cctggccttg gcagatagaa tatattcatt tcctgatccg ccaactgata
2341 cgcctcttga cttggctatt cagcaactgc agaaccttgc tatcgagagc ataccagatc
2401 ctccaaccaa tactccagag gctctctgcg gtcctacgga gaattcgaga agtcctcagg
2461 actgaactga cctacctaca atatgggtgg agctatttc
//
last modified: Tue May 31 10:56 2022