HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    HQ172192		     598 bp    DNA     linear	VRL 01-SEP-2010
DEFINITION  HIV-1 isolate B_B_DNA_h from Zimbabwe envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   HQ172192
VERSION     HQ172192.1 GI:304572487
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 598)
            Show all sequences for reference 1
  AUTHORS   Gantt,S., Carlsson,J., Heath,L., Bull,M.E., Shetty,A.K.,
	    Mutsvangwa,J., Musingwini,G., Woelk,G., Zijenah,L.S.,
	    Katzenstein,D.A., Mullins,J.I. and Frenkel,L.M.
  TITLE     Genetic analyses of HIV-1 env sequences demonstrate limited
	    compartmentalization in breast milk and suggest viral replication
	    within the breast that increases with mastitis.
  JOURNAL   J. Virol.. 84(20); 10812-9 (2010)
  PUBMED    20660189
REFERENCE   2 (bases 1 to 598)
            Show all sequences for reference 2
  AUTHORS   Gantt,S., Carlsson,J.N., Heath,L., Bull,M.E., Zijenah,A.K.,
	    Mutsvangwa,J., Musingwini,G., Woelk,G., Zijenah,L.S.,
	    Katzenstein,D.A., Mullins,J.I. and Frenkel,L.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2010) Center for Childhood Infections and
	    Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
	    Seattle, WA 98101, USA
FEATURES             Location/Qualifiers
     source	     1..598
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="B_B_DNA_h"
		     /isolation_source="whole blood"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="Zimbabwe"
		     /collection_date="2005"
		     /note="subtype: C"
     gene	     <1..>598
		     /gene="env"
     CDS	     <1..>598
		     /gene="env"
		     /note="gp120"
		     /codon_start="2"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADM45385.1"
		     /db_xref="GI:304572488"
		     /translation="DIIIRSENLTNNAKIIIVQFNETVNITCTRHNNNTRESMRIGPG
		     QTFYATGDIIGDIREAHCNISRAKWNETLRRVSEKLKEHFPNATTIKFNSSSGGDPEI
		     TEHSFNCGGEFFYCNTSQLFNGTYNETTYNETPENITLTLPCRIKQIINMWQEVGRAM
		     YAPPIAGKILCVSNITGLLLVRDGGNTNTSDATEIFRPG"
BASE COUNT	249 a	 107 c	  109 g    133 t
ORIGIN
       1 agacataata attagatctg aaaatctgac aaacaatgcc aaaataataa tagtacagtt 
      61 taatgaaact gtaaacatta cgtgtacaag acataacaat aatacaagag aaagcatgag 
     121 aataggacca ggacaaacat tctatgcaac aggggatata ataggagaca tcagagaagc 
     181 acattgtaac attagtagag ctaagtggaa tgaaacctta cgaagggtaa gtgaaaaatt 
     241 aaaagaacac ttccctaatg caacaacaat aaaatttaac tcatcctcag gaggggaccc 
     301 agaaattaca gaacatagct ttaattgtgg aggagaattt ttctattgca atacatcaca 
     361 actgtttaat ggtacataca atgaaactac atacaatgaa actccagaga acatcacact 
     421 tacactccca tgcagaataa aacaaattat aaacatgtgg caggaggtag gacgggcaat 
     481 gtatgcccct cccattgcag ggaaaatatt atgtgtatca aacatcacag gactactatt 
     541 agtacgtgat ggaggcaaca ctaacactag cgatgccaca gaaatattca gacctgga
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.