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LOCUS HQ172192 598 bp DNA linear VRL 01-SEP-2010
DEFINITION HIV-1 isolate B_B_DNA_h from Zimbabwe envelope glycoprotein (env)
gene, partial cds
ACCESSION HQ172192
VERSION HQ172192.1 GI:304572487
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 598)
Show all sequences for reference 1
AUTHORS Gantt,S., Carlsson,J., Heath,L., Bull,M.E., Shetty,A.K.,
Mutsvangwa,J., Musingwini,G., Woelk,G., Zijenah,L.S.,
Katzenstein,D.A., Mullins,J.I. and Frenkel,L.M.
TITLE Genetic analyses of HIV-1 env sequences demonstrate limited
compartmentalization in breast milk and suggest viral replication
within the breast that increases with mastitis.
JOURNAL J. Virol.. 84(20); 10812-9 (2010)
PUBMED 20660189
REFERENCE 2 (bases 1 to 598)
Show all sequences for reference 2
AUTHORS Gantt,S., Carlsson,J.N., Heath,L., Bull,M.E., Zijenah,A.K.,
Mutsvangwa,J., Musingwini,G., Woelk,G., Zijenah,L.S.,
Katzenstein,D.A., Mullins,J.I. and Frenkel,L.M.
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2010) Center for Childhood Infections and
Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
Seattle, WA 98101, USA
FEATURES Location/Qualifiers
source 1..598
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="B_B_DNA_h"
/isolation_source="whole blood"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Zimbabwe"
/collection_date="2005"
/note="subtype: C"
gene <1..>598
/gene="env"
CDS <1..>598
/gene="env"
/note="gp120"
/codon_start="2"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADM45385.1"
/db_xref="GI:304572488"
/translation="DIIIRSENLTNNAKIIIVQFNETVNITCTRHNNNTRESMRIGPG
QTFYATGDIIGDIREAHCNISRAKWNETLRRVSEKLKEHFPNATTIKFNSSSGGDPEI
TEHSFNCGGEFFYCNTSQLFNGTYNETTYNETPENITLTLPCRIKQIINMWQEVGRAM
YAPPIAGKILCVSNITGLLLVRDGGNTNTSDATEIFRPG"
BASE COUNT 249 a 107 c 109 g 133 t
ORIGIN
1 agacataata attagatctg aaaatctgac aaacaatgcc aaaataataa tagtacagtt
61 taatgaaact gtaaacatta cgtgtacaag acataacaat aatacaagag aaagcatgag
121 aataggacca ggacaaacat tctatgcaac aggggatata ataggagaca tcagagaagc
181 acattgtaac attagtagag ctaagtggaa tgaaacctta cgaagggtaa gtgaaaaatt
241 aaaagaacac ttccctaatg caacaacaat aaaatttaac tcatcctcag gaggggaccc
301 agaaattaca gaacatagct ttaattgtgg aggagaattt ttctattgca atacatcaca
361 actgtttaat ggtacataca atgaaactac atacaatgaa actccagaga acatcacact
421 tacactccca tgcagaataa aacaaattat aaacatgtgg caggaggtag gacgggcaat
481 gtatgcccct cccattgcag ggaaaatatt atgtgtatca aacatcacag gactactatt
541 agtacgtgat ggaggcaaca ctaacactag cgatgccaca gaaatattca gacctgga
//
last modified: Tue May 31 10:56 2022