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LOCUS HQ172190 587 bp DNA linear VRL 01-SEP-2010
DEFINITION HIV-1 isolate B_B_DNA_f from Zimbabwe envelope glycoprotein (env)
gene, partial cds
ACCESSION HQ172190
VERSION HQ172190.1 GI:304572483
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 587)
Show all sequences for reference 1
AUTHORS Gantt,S., Carlsson,J., Heath,L., Bull,M.E., Shetty,A.K.,
Mutsvangwa,J., Musingwini,G., Woelk,G., Zijenah,L.S.,
Katzenstein,D.A., Mullins,J.I. and Frenkel,L.M.
TITLE Genetic analyses of HIV-1 env sequences demonstrate limited
compartmentalization in breast milk and suggest viral replication
within the breast that increases with mastitis.
JOURNAL J. Virol.. 84(20); 10812-9 (2010)
PUBMED 20660189
REFERENCE 2 (bases 1 to 587)
Show all sequences for reference 2
AUTHORS Gantt,S., Carlsson,J.N., Heath,L., Bull,M.E., Zijenah,A.K.,
Mutsvangwa,J., Musingwini,G., Woelk,G., Zijenah,L.S.,
Katzenstein,D.A., Mullins,J.I. and Frenkel,L.M.
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2010) Center for Childhood Infections and
Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
Seattle, WA 98101, USA
FEATURES Location/Qualifiers
source 1..587
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="B_B_DNA_f"
/isolation_source="whole blood"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Zimbabwe"
/collection_date="2005"
/note="subtype: C"
gene <1..>587
/gene="env"
CDS <1..>587
/gene="env"
/note="gp120"
/codon_start="2"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADM45383.1"
/db_xref="GI:304572484"
/translation="DIIIRSENLTNNAKIIIVQFNETINITCTRHNNNTRESMRIGPG
HTFYATGDIIGDIREAHCNVSKRNWTKALQGVSEKLKEHFNKTIKFNSSSGGDPEITS
HSFNCEGEFFYCNTSQLFNFTYNTTTHNTTSEDITLTLPCRIKQIINMWQEVGQAMYA
PPIAGNITCVSNITGLLLVRDGGNTNNSDSTEIFR"
BASE COUNT 246 a 104 c 102 g 135 t
ORIGIN
1 agacataata attagatctg aaaatctgac aaacaatgcc aaaataataa tagtacagtt
61 taatgaaact ataaacatta cgtgtacaag acacaacaat aatacaagag aaagcatgag
121 aataggacca ggacacacat tctatgcaac aggtgatata ataggagaca tcagagaagc
181 acattgtaat gttagtaaaa ggaattggac taaagcttta caaggggtaa gtgaaaaatt
241 aaaagaacac tttaataaaa caataaaatt taactcatcc tcaggagggg acccagaaat
301 tacgtcgcat agctttaatt gtgaaggaga atttttctat tgcaatacat cgcaactgtt
361 taattttaca tacaatacaa ctacacacaa tacaacttca gaggacatca cacttacact
421 cccatgcaga ataaaacaaa ttataaacat gtggcaggag gtaggacagg caatgtatgc
481 ccctcccatt gcgggaaaca taacatgtgt atcaaacatc acaggactac tattagtacg
541 tgatgggggc aacactaaca atagcgatag cacagaaata ttcagac
//
last modified: Tue May 31 10:56 2022