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LOCUS HQ172169 603 bp DNA linear VRL 01-SEP-2010
DEFINITION HIV-1 isolate B_left_BM_DNA_f from Zimbabwe envelope glycoprotein
(env) gene, partial cds
ACCESSION HQ172169
VERSION HQ172169.1 GI:304572443
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 603)
Show all sequences for reference 1
AUTHORS Gantt,S., Carlsson,J., Heath,L., Bull,M.E., Shetty,A.K.,
Mutsvangwa,J., Musingwini,G., Woelk,G., Zijenah,L.S.,
Katzenstein,D.A., Mullins,J.I. and Frenkel,L.M.
TITLE Genetic analyses of HIV-1 env sequences demonstrate limited
compartmentalization in breast milk and suggest viral replication
within the breast that increases with mastitis.
JOURNAL J. Virol.. 84(20); 10812-9 (2010)
PUBMED 20660189
REFERENCE 2 (bases 1 to 603)
Show all sequences for reference 2
AUTHORS Gantt,S., Carlsson,J.N., Heath,L., Bull,M.E., Zijenah,A.K.,
Mutsvangwa,J., Musingwini,G., Woelk,G., Zijenah,L.S.,
Katzenstein,D.A., Mullins,J.I. and Frenkel,L.M.
TITLE Direct Submission
JOURNAL Submitted (23-AUG-2010) Center for Childhood Infections and
Prematurity, Seattle Children''s Research Institute, 1900 9th Ave,
Seattle, WA 98101, USA
FEATURES Location/Qualifiers
source 1..603
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="B_left_BM_DNA_f"
/isolation_source="breast milk cells"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="Zimbabwe"
/collection_date="2005"
/note="subtype: C"
gene <1..>603
/gene="env"
CDS <1..>603
/gene="env"
/note="gp120"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADM45364.1"
/db_xref="GI:304572444"
/translation="SLAEDIIIRSENLTNNAKTIIVQFNETVKITCTRHNNNTRESMR
IGPGHTFYATGDIIGDIREAHCNVSKRNWTKALQGVSEKLKEHFNKTIKFNSSSGGDP
EITLHSFNCGGEFFYCNTSQLFNFTYNTTTHNTTSEDITLTLPCRIKQIINMWQEVGQ
AMYAPPIAGNITCVSNITGLLLVRDGGNTNISNSIEIFRPG"
BASE COUNT 252 a 106 c 106 g 139 t
ORIGIN
1 agcctagcag aagacataat aattagatct gaaaatctga caaacaatgc caaaacaata
61 atagtacagt ttaatgaaac tgtaaaaatt acatgtacaa gacacaacaa taatacaaga
121 gaaagtatga ggataggacc aggacacaca ttctatgcaa caggtgatat aataggagac
181 atcagagaag cacattgcaa tgttagtaaa aggaattgga ctaaagcttt acaaggggta
241 agtgaaaaat taaaagaaca ctttaataaa acaataaaat ttaactcatc ctcaggaggg
301 gacccagaaa ttacgttgca tagctttaat tgtggaggag aatttttcta ttgcaataca
361 tcgcaactgt ttaattttac atacaataca actacacaca atacaacttc agaggacatc
421 acacttacac tcccatgcag aataaaacaa attataaaca tgtggcagga ggtaggacag
481 gcaatgtatg cccctcccat tgcaggaaac ataacatgtg tatcaaacat cacaggacta
541 ctattagtac gtgatggagg caacactaac attagcaata gcatagaaat attcagacct
601 gga
//
last modified: Tue May 31 10:56 2022