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LOCUS	    HQ012341		     760 bp    DNA     linear	VRL 19-APR-2011
DEFINITION  HIV-1 isolate 10ZA_SAVE2395 from South Africa reverse transcriptase
	    (pol) gene, partial cds
ACCESSION   HQ012341
VERSION     HQ012341.1 GI:328905185
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 760)
            Show all sequences for reference 1
  AUTHORS   El-Khatib,Z., DeLong,A., Katzenstein,D., Ekstrom,A.M., Ledwaba,J.,
	    Mohapi,L., Laher,F., Charalambous,S., Karstaedt,A., Petzold,M.,
	    Morris,L. and Kantor,R.
  TITLE     Viremia and drug resistance among HIV-1 patients on antiretroviral
	    treatment: a cross-sectional study in Soweto, South Africa
  JOURNAL   AIDS 24 (11), 1679-1687 (2010)
  PUBMED    20453629
REFERENCE   2 (bases 1 to 760)
            Show all sequences for reference 2
  AUTHORS   El-Khatib,Z., DeLong,A., Katzenstein,D., Ekstrom,A.M., Ledwaba,J.,
	    Mohapi,L., Laher,F., Charalambous,S., Karstaedt,A., Petzold,M.,
	    Morris,L. and Kantor,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-AUG-2010) National Institute for Communicable
	    Diseases (NICD), Virus Research Unit, Private Bag X4, Johannesburg,
	    Gauteng 2131, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
  TITLE     Low Frequency of Protease Inhibitor Resistance Mutations and
	    Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
  JOURNAL   AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
  PUBMED    30793914
FEATURES             Location/Qualifiers
     source	     1..760
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="10ZA_SAVE2395"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /collection_date="11-Sep-2008"
     gene	     <1..>760
		     /gene="pol"
     CDS	     <1..>760
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="AEB54868.1"
		     /db_xref="GI:328905186"
		     /translation="XTVPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKEGKITK
		     IGPENPYNTPXFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLXKXKSVT
		     VLDVGDAYFSVPLDEXFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT
		     XILEPFRXXNPXIVIYQYXDDLXVGSDLEIXQHRXKIEELRZHLLXWGFTTPDKKHQK
		     EPPFLWMGYELHPDKWTVQPIQLPEKESWTVNDIQ"
BASE COUNT	286 a	 120 c	  152 g    160 t     42 other
ORIGIN
       1 gawactgtac cagtaaaatt aaagccagga atggatggcc caaaggttaa acaatggcca 
      61 ttgacagaag aaaaaataaa agcattaaca gcaatttgtg atgaratgga raaggaagga 
     121 aaaatcacaa aaattgggcc tgaaaatcca tataacacyc cartatttgc yataaaaaag 
     181 aaggacagta ctaagtggag aaaattagta gatttcaggg aactyaataa aagaactcaa 
     241 gayttttggg argttcaatt aggaataccr cacccagcag gattamagaa gaamaaatca 
     301 gtgacagtgc trgatgtggg rgatgcatat ttttcagttc ctttagatga argcttcagg 
     361 aaatatactg cattcaccat acctagyata aayaatgaaa caccagggat tagatatcaa 
     421 tataatgtgc ttccacaggg atggaaagga tcaccagcaa tattccagag yagcatgaca 
     481 argatcttag agccctttag rrcamaaaat ccagamatag tcatctatca atatrtggat 
     541 gacttrywtg taggatctga yttagaaata gkgcagcata garcraarat agaggagyta 
     601 agasarcatc trttaarrtg gggattyacc acaccagaya agaaacatca gaaagaaccc 
     661 ccatttcttt ggatggggta tgaactccat ccygacaaat ggacagtaca gcctatacag 
     721 ctgccmgaaa aggagagctg gactgtcaat gatatacaga 
//
last modified: Tue May 31 10:56 2022


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