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LOCUS HQ012341 760 bp DNA linear VRL 19-APR-2011
DEFINITION HIV-1 isolate 10ZA_SAVE2395 from South Africa reverse transcriptase
(pol) gene, partial cds
ACCESSION HQ012341
VERSION HQ012341.1 GI:328905185
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 760)
Show all sequences for reference 1
AUTHORS El-Khatib,Z., DeLong,A., Katzenstein,D., Ekstrom,A.M., Ledwaba,J.,
Mohapi,L., Laher,F., Charalambous,S., Karstaedt,A., Petzold,M.,
Morris,L. and Kantor,R.
TITLE Viremia and drug resistance among HIV-1 patients on antiretroviral
treatment: a cross-sectional study in Soweto, South Africa
JOURNAL AIDS 24 (11), 1679-1687 (2010)
PUBMED 20453629
REFERENCE 2 (bases 1 to 760)
Show all sequences for reference 2
AUTHORS El-Khatib,Z., DeLong,A., Katzenstein,D., Ekstrom,A.M., Ledwaba,J.,
Mohapi,L., Laher,F., Charalambous,S., Karstaedt,A., Petzold,M.,
Morris,L. and Kantor,R.
TITLE Direct Submission
JOURNAL Submitted (03-AUG-2010) National Institute for Communicable
Diseases (NICD), Virus Research Unit, Private Bag X4, Johannesburg,
Gauteng 2131, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Ledwaba,J., Sayed,Y., Pillay,V., Morris,L. and Hunt,G.
TITLE Low Frequency of Protease Inhibitor Resistance Mutations and
Insertions in HIV-1 Subtype C Protease Inhibitor-Naive Sequences.
JOURNAL AIDS Res. Hum. Retroviruses. 35(7); 673-678 (2019)
PUBMED 30793914
FEATURES Location/Qualifiers
source 1..760
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="10ZA_SAVE2395"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="South Africa"
/collection_date="11-Sep-2008"
gene <1..>760
/gene="pol"
CDS <1..>760
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="AEB54868.1"
/db_xref="GI:328905186"
/translation="XTVPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKEGKITK
IGPENPYNTPXFAIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLXKXKSVT
VLDVGDAYFSVPLDEXFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMT
XILEPFRXXNPXIVIYQYXDDLXVGSDLEIXQHRXKIEELRZHLLXWGFTTPDKKHQK
EPPFLWMGYELHPDKWTVQPIQLPEKESWTVNDIQ"
BASE COUNT 286 a 120 c 152 g 160 t 42 other
ORIGIN
1 gawactgtac cagtaaaatt aaagccagga atggatggcc caaaggttaa acaatggcca
61 ttgacagaag aaaaaataaa agcattaaca gcaatttgtg atgaratgga raaggaagga
121 aaaatcacaa aaattgggcc tgaaaatcca tataacacyc cartatttgc yataaaaaag
181 aaggacagta ctaagtggag aaaattagta gatttcaggg aactyaataa aagaactcaa
241 gayttttggg argttcaatt aggaataccr cacccagcag gattamagaa gaamaaatca
301 gtgacagtgc trgatgtggg rgatgcatat ttttcagttc ctttagatga argcttcagg
361 aaatatactg cattcaccat acctagyata aayaatgaaa caccagggat tagatatcaa
421 tataatgtgc ttccacaggg atggaaagga tcaccagcaa tattccagag yagcatgaca
481 argatcttag agccctttag rrcamaaaat ccagamatag tcatctatca atatrtggat
541 gacttrywtg taggatctga yttagaaata gkgcagcata garcraarat agaggagyta
601 agasarcatc trttaarrtg gggattyacc acaccagaya agaaacatca gaaagaaccc
661 ccatttcttt ggatggggta tgaactccat ccygacaaat ggacagtaca gcctatacag
721 ctgccmgaaa aggagagctg gactgtcaat gatatacaga
//
last modified: Tue May 31 10:56 2022