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LOCUS	    HM771412		    2445 bp    DNA     linear	VRL 27-DEC-2010
DEFINITION  HIV-1 isolate C98-15 from USA envelope glycoprotein (env) gene,
	    partial cds
ACCESSION   HM771412
VERSION     HM771412.1 GI:315420984
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2445)
            Show all sequences for reference 1
  AUTHORS   Peters,P.J., Duenas-Decamp,M.J., Sullivan,W.M., Brown,R.,
	    Ankghaumbom,C., Luzuriaga,K., Robinson,J., Burton,D.R., Bell,J.,
	    Simmonds,P., Ball,J. and Clapham,P.R.
  TITLE     Variation in HIV-1 R5 macrophage-tropism correlates with
	    sensitivity to reagents that block envelope: CD4 interactions but
	    not with sensitivity to other entry inhibitors
  JOURNAL   Unpublished
REFERENCE   2 (bases 1 to 2445)
            Show all sequences for reference 2
  AUTHORS   Musich,T., Peters,P.J., Sullivan,W.M., Duenas-Decamp,M.J.,
	    Brown,R., Gonzalez-Perez,M.P., Zolla-Pazner,S., Ankghaumbom,C.,
	    Ball,J., Luzuriaga,K., Robinson,J., Clapham,P.R., Burton,D.R.,
	    Bell,J. and Simmonds,P.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JUL-2010) Program in Molecular Medicine and
	    Department of Molecular Genetics and Microbiology, University of
	    Massachusetts Medical School, 373 Plantation Street Biotech II
	    Suite 315, Worcester, MA 01605, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Musich,T., Peters,P.J., Duenas-Decamp,M.J., Gonzalez-Perez,M.P.,
	    Robinson,J., Zolla-Pazner,S., Ball,J.K., Luzuriaga,K. and
	    Clapham,P.R.
  TITLE     A conserved determinant in the V1 loop of HIV-1 that modulates the
	    V3 loop to prime low CD4 use and macrophage infection.
  JOURNAL   J Virol. 2010 Dec 15.
  PUBMED    21159865
FEATURES             Location/Qualifiers
     source	     1..2445
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="C98-15"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..2445
		     /gene="env"
     CDS	     <1..2445
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ADU15842.1"
		     /db_xref="GI:315420985"
		     /translation="VPVWKEATTTLFCASDAKAHVTEVHNVWATHACVPTDPNPQEVA
		     LINVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLKCTDVNVTNASSNI
		     TNATNIGGEMRGGIKNCSFNITTNIRNKMQKQYALFNKLDVVPIDDDNTSYRLISCNT
		     SVITQACPKITFEPIPIHYCAPAGFALLKCNNKTFNGTGPCTNVSTVQCTHGIKPVVS
		     TQLLLNGSLAEEEVVLRSANFTDNAKTIIVQLNESVVINCTRPNNNTRKGIHLGPGRT
		     FYATGEIIGDIRQAHCNLSRTEWNNTLKQIVIKLKEQYGNNKTIVFTQSSGGDPEIVM
		     HSVNCGGEFFYCNTTQLFNSTWNDTKGSNNTKGNDTIILPCRIKQIINMWQEVGRAMY
		     APPIQGLIRCTSNITGLLLTRDGGDTNNTVETFRPGGGNMKDNWRNELYKYKVVKIEP
		     LGVAPTKARRRVVQREKRAVGLGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQ
		     QNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVP
		     WNNSWSKNRSVEDIWNNMTWMEWEREIDNYTNTIYTLLAESQNQQDKNEQELLELDKW
		     ANLWDWFSITNWLWYIKIFIIIVASLVGLRIFFTVLSIVNRVRQGYSPLSFQTHLPAQ
		     RGPDRPEGIEEEGGERDSGRSGQLVNGFFTLIWVDLRSLCLWSYHRLRDLLLIVLRIV
		     EVLGRRGWEILKYWWNLLQYWSQELKNSAVSLLNVTAIAVAEGTDRVIEVLQRAGRAI
		     LHIPRRIRQGLERALL"
BASE COUNT	868 a	 421 c	  558 g    598 t
ORIGIN
       1 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcacat 
      61 gttacagagg tacataatgt ttgggccaca catgcctgcg tacccaccga ccccaaccca 
     121 caagaagtag cattaataaa tgtgacagaa aattttaaca tgtggaaaaa tgacatggta 
     181 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaaa 
     241 ttaaccccac tctgtgttac tttaaaatgc actgatgtta atgttactaa tgccagtagc 
     301 aatattacta atgccactaa tattggaggg gaaatgaggg gaggaataaa aaattgctct 
     361 ttcaatatta ccacaaacat aagaaataaa atgcagaaac aatatgcgct ttttaataaa 
     421 cttgatgtag taccaataga tgatgataat actagttata ggttgataag ttgtaacacc 
     481 tcagtcatta cacaggcatg tccaaagata acctttgaac caattcccat acattattgt 
     541 gccccggctg gttttgcgct tctaaagtgt aacaataaaa cgtttaatgg gacaggacca 
     601 tgcacaaatg tcagcacagt acaatgcaca catggaatta agccagtagt atcaactcaa 
     661 ctgctgttaa atggcagtct agcagaagaa gaggtagtac ttagatctgc aaacttcaca 
     721 gacaatgcta aaaccataat agtacagctg aatgaatctg tagtaattaa ttgtacaaga 
     781 cccaacaaca atacaagaaa aggtatacat ctaggaccag gcagaacatt ttatgcaaca 
     841 ggggaaataa taggagatat acgacaagca cattgtaatc ttagtagaac agaatggaat 
     901 aacactttaa aacagatagt tataaaatta aaagaacaat atgggaataa taaaacaata 
     961 gtctttactc aatcctcagg aggggaccca gaaattgtaa tgcacagtgt taattgtgga 
    1021 ggggaatttt tctactgtaa tacaacacaa ctgtttaata gtacttggaa tgatactaaa 
    1081 gggtcaaata acactaaagg aaatgacaca atcatactcc catgcaggat aaaacaaatt 
    1141 ataaacatgt ggcaggaagt aggaagagca atgtatgccc ctcccatcca aggactaatt 
    1201 agatgtacat caaatattac agggttgcta ttaacaagag atggtggtga tactaataat 
    1261 acagtggaga ccttcagacc tggaggagga aatatgaagg acaattggag aaatgaatta 
    1321 tataaatata aagtagtaaa aattgaacca ttaggagtag cacccaccaa ggcaaggaga 
    1381 agagtggtgc agagagaaaa aagagcagtg ggattaggag ctctgttcct tgggttcttg 
    1441 ggagcagcag gaagcactat gggcgcagcg tcaatgacgc tgacggtaca ggctagacaa 
    1501 ttattgtctg gtatagtgca acagcagaac aatttgctga gagctattga ggcgcaacag 
    1561 catctgttgc aactcacagt ctggggcatc aagcagctcc aggcaagagt cctggctgtg 
    1621 gaaagatacc taaaggatca acagctcctg gggatttggg gttgctctgg aaaactcatt 
    1681 tgcaccactg ctgtgccttg gaataatagt tggagtaaga atagatctgt ggaggatatt 
    1741 tggaataaca tgacctggat ggagtgggaa agagaaattg ataattacac aaacacaata 
    1801 tacactttac ttgcagaatc gcaaaaccag caagataaga atgaacaaga attattggaa 
    1861 ttggacaaat gggcaaattt gtgggattgg tttagcataa caaactggct gtggtatata 
    1921 aaaatattta taataatagt agcaagcttg gtaggtttaa gaatattttt tactgtactt 
    1981 tctatagtga atagagttag gcagggatac tcaccattat cgtttcagac ccacctccca 
    2041 gcacagaggg gacccgacag gcccgaagga atcgaagaag aaggtggaga gagagacagc 
    2101 ggcagatccg gacaattagt gaacggattc ttcacactta tctgggtcga tttgaggagc 
    2161 ctgtgcctct ggagctacca ccgcttgaga gacttactct tgattgtact gaggattgtg 
    2221 gaagttctgg gacgcagggg gtgggaaatc ctcaaatatt ggtggaatct cctacagtat 
    2281 tggagccagg aactaaagaa tagtgctgtt agcttgctca atgtcacagc catagcagta 
    2341 gctgagggga cagatagggt tatagaagta ctacaaagag ctggtagagc tattctccac 
    2401 atacctagaa gaataagaca gggcttggaa agagctttgc tataa
//
last modified: Tue May 31 10:56 2022


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