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LOCUS HM771412 2445 bp DNA linear VRL 27-DEC-2010
DEFINITION HIV-1 isolate C98-15 from USA envelope glycoprotein (env) gene,
partial cds
ACCESSION HM771412
VERSION HM771412.1 GI:315420984
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2445)
Show all sequences for reference 1
AUTHORS Peters,P.J., Duenas-Decamp,M.J., Sullivan,W.M., Brown,R.,
Ankghaumbom,C., Luzuriaga,K., Robinson,J., Burton,D.R., Bell,J.,
Simmonds,P., Ball,J. and Clapham,P.R.
TITLE Variation in HIV-1 R5 macrophage-tropism correlates with
sensitivity to reagents that block envelope: CD4 interactions but
not with sensitivity to other entry inhibitors
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 2445)
Show all sequences for reference 2
AUTHORS Musich,T., Peters,P.J., Sullivan,W.M., Duenas-Decamp,M.J.,
Brown,R., Gonzalez-Perez,M.P., Zolla-Pazner,S., Ankghaumbom,C.,
Ball,J., Luzuriaga,K., Robinson,J., Clapham,P.R., Burton,D.R.,
Bell,J. and Simmonds,P.
TITLE Direct Submission
JOURNAL Submitted (14-JUL-2010) Program in Molecular Medicine and
Department of Molecular Genetics and Microbiology, University of
Massachusetts Medical School, 373 Plantation Street Biotech II
Suite 315, Worcester, MA 01605, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Musich,T., Peters,P.J., Duenas-Decamp,M.J., Gonzalez-Perez,M.P.,
Robinson,J., Zolla-Pazner,S., Ball,J.K., Luzuriaga,K. and
Clapham,P.R.
TITLE A conserved determinant in the V1 loop of HIV-1 that modulates the
V3 loop to prime low CD4 use and macrophage infection.
JOURNAL J Virol. 2010 Dec 15.
PUBMED 21159865
FEATURES Location/Qualifiers
source 1..2445
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="C98-15"
/host="Homo sapiens"
/db_xref="taxon:11676"
/country="USA"
gene <1..2445
/gene="env"
CDS <1..2445
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ADU15842.1"
/db_xref="GI:315420985"
/translation="VPVWKEATTTLFCASDAKAHVTEVHNVWATHACVPTDPNPQEVA
LINVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVTLKCTDVNVTNASSNI
TNATNIGGEMRGGIKNCSFNITTNIRNKMQKQYALFNKLDVVPIDDDNTSYRLISCNT
SVITQACPKITFEPIPIHYCAPAGFALLKCNNKTFNGTGPCTNVSTVQCTHGIKPVVS
TQLLLNGSLAEEEVVLRSANFTDNAKTIIVQLNESVVINCTRPNNNTRKGIHLGPGRT
FYATGEIIGDIRQAHCNLSRTEWNNTLKQIVIKLKEQYGNNKTIVFTQSSGGDPEIVM
HSVNCGGEFFYCNTTQLFNSTWNDTKGSNNTKGNDTIILPCRIKQIINMWQEVGRAMY
APPIQGLIRCTSNITGLLLTRDGGDTNNTVETFRPGGGNMKDNWRNELYKYKVVKIEP
LGVAPTKARRRVVQREKRAVGLGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQ
QNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVP
WNNSWSKNRSVEDIWNNMTWMEWEREIDNYTNTIYTLLAESQNQQDKNEQELLELDKW
ANLWDWFSITNWLWYIKIFIIIVASLVGLRIFFTVLSIVNRVRQGYSPLSFQTHLPAQ
RGPDRPEGIEEEGGERDSGRSGQLVNGFFTLIWVDLRSLCLWSYHRLRDLLLIVLRIV
EVLGRRGWEILKYWWNLLQYWSQELKNSAVSLLNVTAIAVAEGTDRVIEVLQRAGRAI
LHIPRRIRQGLERALL"
BASE COUNT 868 a 421 c 558 g 598 t
ORIGIN
1 gtacctgtgt ggaaagaagc aaccaccact ctattttgtg catcagatgc taaagcacat
61 gttacagagg tacataatgt ttgggccaca catgcctgcg tacccaccga ccccaaccca
121 caagaagtag cattaataaa tgtgacagaa aattttaaca tgtggaaaaa tgacatggta
181 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaaa
241 ttaaccccac tctgtgttac tttaaaatgc actgatgtta atgttactaa tgccagtagc
301 aatattacta atgccactaa tattggaggg gaaatgaggg gaggaataaa aaattgctct
361 ttcaatatta ccacaaacat aagaaataaa atgcagaaac aatatgcgct ttttaataaa
421 cttgatgtag taccaataga tgatgataat actagttata ggttgataag ttgtaacacc
481 tcagtcatta cacaggcatg tccaaagata acctttgaac caattcccat acattattgt
541 gccccggctg gttttgcgct tctaaagtgt aacaataaaa cgtttaatgg gacaggacca
601 tgcacaaatg tcagcacagt acaatgcaca catggaatta agccagtagt atcaactcaa
661 ctgctgttaa atggcagtct agcagaagaa gaggtagtac ttagatctgc aaacttcaca
721 gacaatgcta aaaccataat agtacagctg aatgaatctg tagtaattaa ttgtacaaga
781 cccaacaaca atacaagaaa aggtatacat ctaggaccag gcagaacatt ttatgcaaca
841 ggggaaataa taggagatat acgacaagca cattgtaatc ttagtagaac agaatggaat
901 aacactttaa aacagatagt tataaaatta aaagaacaat atgggaataa taaaacaata
961 gtctttactc aatcctcagg aggggaccca gaaattgtaa tgcacagtgt taattgtgga
1021 ggggaatttt tctactgtaa tacaacacaa ctgtttaata gtacttggaa tgatactaaa
1081 gggtcaaata acactaaagg aaatgacaca atcatactcc catgcaggat aaaacaaatt
1141 ataaacatgt ggcaggaagt aggaagagca atgtatgccc ctcccatcca aggactaatt
1201 agatgtacat caaatattac agggttgcta ttaacaagag atggtggtga tactaataat
1261 acagtggaga ccttcagacc tggaggagga aatatgaagg acaattggag aaatgaatta
1321 tataaatata aagtagtaaa aattgaacca ttaggagtag cacccaccaa ggcaaggaga
1381 agagtggtgc agagagaaaa aagagcagtg ggattaggag ctctgttcct tgggttcttg
1441 ggagcagcag gaagcactat gggcgcagcg tcaatgacgc tgacggtaca ggctagacaa
1501 ttattgtctg gtatagtgca acagcagaac aatttgctga gagctattga ggcgcaacag
1561 catctgttgc aactcacagt ctggggcatc aagcagctcc aggcaagagt cctggctgtg
1621 gaaagatacc taaaggatca acagctcctg gggatttggg gttgctctgg aaaactcatt
1681 tgcaccactg ctgtgccttg gaataatagt tggagtaaga atagatctgt ggaggatatt
1741 tggaataaca tgacctggat ggagtgggaa agagaaattg ataattacac aaacacaata
1801 tacactttac ttgcagaatc gcaaaaccag caagataaga atgaacaaga attattggaa
1861 ttggacaaat gggcaaattt gtgggattgg tttagcataa caaactggct gtggtatata
1921 aaaatattta taataatagt agcaagcttg gtaggtttaa gaatattttt tactgtactt
1981 tctatagtga atagagttag gcagggatac tcaccattat cgtttcagac ccacctccca
2041 gcacagaggg gacccgacag gcccgaagga atcgaagaag aaggtggaga gagagacagc
2101 ggcagatccg gacaattagt gaacggattc ttcacactta tctgggtcga tttgaggagc
2161 ctgtgcctct ggagctacca ccgcttgaga gacttactct tgattgtact gaggattgtg
2221 gaagttctgg gacgcagggg gtgggaaatc ctcaaatatt ggtggaatct cctacagtat
2281 tggagccagg aactaaagaa tagtgctgtt agcttgctca atgtcacagc catagcagta
2341 gctgagggga cagatagggt tatagaagta ctacaaagag ctggtagagc tattctccac
2401 atacctagaa gaataagaca gggcttggaa agagctttgc tataa
//
last modified: Tue May 31 10:56 2022