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LOCUS HM635479 1302 bp RNA linear VRL 31-JUL-2011
DEFINITION HIV-1 clone 1652_091106 from Malawi pol protein (pol) gene, partial
cds
ACCESSION HM635479
VERSION HM635479.1 GI:338227738
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Initiation of antiretroviral treatment in women after delivery can
induce multiclass drug resistance in breastfeeding HIV-infected
infants.
JOURNAL Clin. Infect. Dis.. 52(8); 1069-76 (2011)
PUBMED 21460326
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="1652"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="1652_091106"
/country="Malawi"
/collection_date="11-Sep-2006"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEI90840.1"
/db_xref="GI:338227739"
/translation="PQITLWQRPLVTIKVGGQIKEALLDTGADDTVLEELALPGRWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICEEMEKEGKITKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELRSHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDII
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQEHG"
BASE COUNT 518 a 207 c 277 g 300 t
ORIGIN
1 cctcagatca ctctttggca gcgacccctt gttacaataa aagtaggggg ccagataaaa
61 gaggctctct tagatacagg agcagatgac acagtattag aagaattggc tttaccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatatgttg actcagcttg gatgcacact aaattttcca
301 attagtccta ttgaaactgt accagtaaaa ttaaaaccag ggatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tgaagagatg
421 gagaaggaag gaaaaattac aaagattggg cctgaaaatc cttataacac tccaatattt
481 gccataaaaa agaaggacag tactaaatgg agaaaattag tagatttcag ggaactcaat
541 aaaagaactc aagatttttg ggaagttcag ttaggaatac cacacccagc agggttaaaa
601 aagaaaaaat cagtgacagt actagatgtg ggggatgcat atttttcggt tcctttagat
661 gaaggattca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg
721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcccttt agagcaaaaa acccagaaat agttatctat
841 caatatatgg atgacttata tgtaggatct gatttagaaa tagggcaaca tagagcaaaa
901 atagaggaat taagaagcca cctattgaaa tggggattta ccacaccaga taaaaaacat
961 cagaaggaac ccccatttct gtggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agttaccaga aaaggatagc tggactgtca atgatataca aaagttagtg
1081 gggaaactaa actgggcaag tcagatttac ccagggatta aagtaaagca actttgtaaa
1141 ctccttaggg gggccaaagc actaacagat ataataccac tgactgaaga agcagaatta
1201 gaattagcag agaacaggga aattctaaaa gaaccagtac atggagtata ttatgatcca
1261 tcaaaagatt taatagctga aatacagaaa caagagcatg gc
//
last modified: Tue May 31 10:56 2022