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LOCUS	    HM635479		    1302 bp    RNA     linear	VRL 31-JUL-2011
DEFINITION  HIV-1 clone 1652_091106 from Malawi pol protein (pol) gene, partial
	    cds
ACCESSION   HM635479
VERSION     HM635479.1 GI:338227738
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Initiation of antiretroviral treatment in women after delivery can
	    induce multiclass drug resistance in breastfeeding HIV-infected
	    infants.
  JOURNAL   Clin. Infect. Dis.. 52(8); 1069-76 (2011)
  PUBMED    21460326
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
	    Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="1652"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="1652_091106"
		     /country="Malawi"
		     /collection_date="11-Sep-2006"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEI90840.1"
		     /db_xref="GI:338227739"
		     /translation="PQITLWQRPLVTIKVGGQIKEALLDTGADDTVLEELALPGRWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICEEMEKEGKITKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRAKNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELRSHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTDII
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQEHG"
BASE COUNT	518 a	 207 c	  277 g    300 t
ORIGIN
       1 cctcagatca ctctttggca gcgacccctt gttacaataa aagtaggggg ccagataaaa 
      61 gaggctctct tagatacagg agcagatgac acagtattag aagaattggc tttaccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatatgttg actcagcttg gatgcacact aaattttcca 
     301 attagtccta ttgaaactgt accagtaaaa ttaaaaccag ggatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tgaagagatg 
     421 gagaaggaag gaaaaattac aaagattggg cctgaaaatc cttataacac tccaatattt 
     481 gccataaaaa agaaggacag tactaaatgg agaaaattag tagatttcag ggaactcaat 
     541 aaaagaactc aagatttttg ggaagttcag ttaggaatac cacacccagc agggttaaaa 
     601 aagaaaaaat cagtgacagt actagatgtg ggggatgcat atttttcggt tcctttagat 
     661 gaaggattca ggaaatatac tgcattcacc atacctagta taaacaatga aacaccaggg 
     721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatctt agagcccttt agagcaaaaa acccagaaat agttatctat 
     841 caatatatgg atgacttata tgtaggatct gatttagaaa tagggcaaca tagagcaaaa 
     901 atagaggaat taagaagcca cctattgaaa tggggattta ccacaccaga taaaaaacat 
     961 cagaaggaac ccccatttct gtggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agttaccaga aaaggatagc tggactgtca atgatataca aaagttagtg 
    1081 gggaaactaa actgggcaag tcagatttac ccagggatta aagtaaagca actttgtaaa 
    1141 ctccttaggg gggccaaagc actaacagat ataataccac tgactgaaga agcagaatta 
    1201 gaattagcag agaacaggga aattctaaaa gaaccagtac atggagtata ttatgatcca 
    1261 tcaaaagatt taatagctga aatacagaaa caagagcatg gc
//
last modified: Tue May 31 10:56 2022


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