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LOCUS	    HM635478		    1302 bp    RNA     linear	VRL 31-JUL-2011
DEFINITION  HIV-1 clone 1566_062606 from Malawi pol protein (pol) gene, partial
	    cds
ACCESSION   HM635478
VERSION     HM635478.1 GI:338227736
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Initiation of antiretroviral treatment in women after delivery can
	    induce multiclass drug resistance in breastfeeding HIV-infected
	    infants.
  JOURNAL   Clin. Infect. Dis.. 52(8); 1069-76 (2011)
  PUBMED    21460326
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
	    Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="1566"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="1566_062606"
		     /country="Malawi"
		     /collection_date="26-Jun-2006"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEI90839.1"
		     /db_xref="GI:338227737"
		     /translation="PQITLWQRPLVSIKVGGQVKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQIPIEICGKKALGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICEEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKKKKSVTVLDVGDAYFSVP
		     LDEGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMTKILEPFRARNPE
		     IVIYQYMDDLYVGSDLEIVQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIELPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQMCKLLRGTKALTDVV
		     PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGND"
BASE COUNT	514 a	 210 c	  279 g    299 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtctcaataa aagtaggggg tcaagtaaaa 
      61 gaggctctct tagatacagg agcagatgat acagtgctag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggtggtttta tcaaagtaag acaatatgat 
     181 caaataccta tagaaatttg tggaaaaaag gctctaggta cagtgttagt gggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagcttg gatgtacact aaatttccca 
     301 attagtccca ttgaaactgt accagtgaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tgaagaaatg 
     421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag tactaagtgg aggaaattag tagatttcag ggagctcaat 
     541 aagagaactc aagacttttg ggaagttcaa ttagggatac cacacccatc tgggttaaaa 
     601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcagt tcctttagat 
     661 gaaggcttca ggaagtatac tgcattcacc atacctagta taaacaatga aacaccaggg 
     721 attagatatc aatataatgt gctcccacag ggatggaaag gatcaccatc aatattccaa 
     781 agtagcatga caaaaatctt agagccattt agagcaagaa acccagaaat agttatctat 
     841 caatatatgg atgacttata tgtaggatct gatttagaaa tagtgcaaca tagagcaaaa 
     901 atagaggagt taagagaaca cctcttgaaa tggggattta ccacaccaga caaaaagcat 
     961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatag agctgccaga taaagatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaagca aatgtgtaaa 
    1141 ctccttaggg ggaccaaagc actaacagat gtagtaccat tgactgaaga agcagaatta 
    1201 gaattagcag agaacaggga aattctaaaa gaaccagtac atggggtata ttatgaccca 
    1261 tcaaaagatt taatagcaga aatacagaaa cagggaaatg ac
//
last modified: Tue May 31 10:56 2022


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