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LOCUS HM635478 1302 bp RNA linear VRL 31-JUL-2011
DEFINITION HIV-1 clone 1566_062606 from Malawi pol protein (pol) gene, partial
cds
ACCESSION HM635478
VERSION HM635478.1 GI:338227736
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Initiation of antiretroviral treatment in women after delivery can
induce multiclass drug resistance in breastfeeding HIV-infected
infants.
JOURNAL Clin. Infect. Dis.. 52(8); 1069-76 (2011)
PUBMED 21460326
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="1566"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="1566_062606"
/country="Malawi"
/collection_date="26-Jun-2006"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEI90839.1"
/db_xref="GI:338227737"
/translation="PQITLWQRPLVSIKVGGQVKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQIPIEICGKKALGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICEEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPSGLKKKKSVTVLDVGDAYFSVP
LDEGFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPSIFQSSMTKILEPFRARNPE
IVIYQYMDDLYVGSDLEIVQHRAKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIELPDKDSWTVNDIQKLVGKLNWASQIYPGIKVKQMCKLLRGTKALTDVV
PLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGND"
BASE COUNT 514 a 210 c 279 g 299 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtctcaataa aagtaggggg tcaagtaaaa
61 gaggctctct tagatacagg agcagatgat acagtgctag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggtggtttta tcaaagtaag acaatatgat
181 caaataccta tagaaatttg tggaaaaaag gctctaggta cagtgttagt gggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagcttg gatgtacact aaatttccca
301 attagtccca ttgaaactgt accagtgaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagaaatttg tgaagaaatg
421 gaaaaggaag gaaaaattac aaaaattggg cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaggacag tactaagtgg aggaaattag tagatttcag ggagctcaat
541 aagagaactc aagacttttg ggaagttcaa ttagggatac cacacccatc tgggttaaaa
601 aagaaaaaat cagtgacagt actggatgtg ggggatgcat atttttcagt tcctttagat
661 gaaggcttca ggaagtatac tgcattcacc atacctagta taaacaatga aacaccaggg
721 attagatatc aatataatgt gctcccacag ggatggaaag gatcaccatc aatattccaa
781 agtagcatga caaaaatctt agagccattt agagcaagaa acccagaaat agttatctat
841 caatatatgg atgacttata tgtaggatct gatttagaaa tagtgcaaca tagagcaaaa
901 atagaggagt taagagaaca cctcttgaaa tggggattta ccacaccaga caaaaagcat
961 cagaaagaac ccccatttct ttggatgggg tatgaactcc atcctgacaa atggacagta
1021 cagcctatag agctgccaga taaagatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccagggatta aagtaaagca aatgtgtaaa
1141 ctccttaggg ggaccaaagc actaacagat gtagtaccat tgactgaaga agcagaatta
1201 gaattagcag agaacaggga aattctaaaa gaaccagtac atggggtata ttatgaccca
1261 tcaaaagatt taatagcaga aatacagaaa cagggaaatg ac
//
last modified: Tue May 31 10:56 2022