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LOCUS	    HM635477		    1302 bp    RNA     linear	VRL 31-JUL-2011
DEFINITION  HIV-1 clone 1376_081606 from Malawi pol protein (pol) gene, partial
	    cds
ACCESSION   HM635477
VERSION     HM635477.1 GI:338227734
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Initiation of antiretroviral treatment in women after delivery can
	    induce multiclass drug resistance in breastfeeding HIV-infected
	    infants.
  JOURNAL   Clin. Infect. Dis.. 52(8); 1069-76 (2011)
  PUBMED    21460326
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
	    Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
	    Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
	    Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="1376"
		     /host="Homo sapiens"
		     /db_xref="taxon:11676"
		     /clone="1376_081606"
		     /country="Malawi"
		     /collection_date="16-Aug-2006"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="AEI90838.1"
		     /db_xref="GI:338227735"
		     /translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQIVIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKEGKITKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEXQLGIPHPAGLXQKKSVTVLDVGDAYFSVP
		     LDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRAQNTD
		     IVICQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKXQKEPPFXWMGYELH
		     PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIV
		     PLTEEAELELAENREILKEPVHGVYYDPSKXLIAEIQKQGHD"
BASE COUNT	511 a	 216 c	  278 g    288 t      9 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctg gtctcaataa aagtaggggg ccaaataaag 
      61 gaagctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgccaggg 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaatagtta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctacc 
     241 cctgtcaaca taattggaag gaatatgttg actcagcttg gatgcacact aaattttcca 
     301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgatgaaatg 
     421 gaaaaggaag gaaaaattac caagattggc cctgaaaatc catataacac tccagtattt 
     481 gccataaaaa agaaagacag tactaagtgg agaaaattgg tagatttcag ggaactaaat 
     541 aaaagaactc aagacttttg ggagrttcaa ttaggaatac cacacccagc agggttaara 
     601 cagaaaaaat cagtgacagt attagatgtg ggagatgcat atttctcagt tcctttagat 
     661 gaagaattta gaaaatatac tgcattcacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc aatataatgt aytgccacag ggatggaaag gatcaccagc aatattccag 
     781 gctagcatga caaaaatctt agagcccttt agggcgcaaa atacagacat agtcatctgc 
     841 caatacatgg atgacttgta tgtaggatct gacttagaga taggacaaca tagagcaaaa 
     901 atagaggagt taagggaaca tctattaaag tggggattta ccacaccaga caagaaayat 
     961 cagaaagaac ccccatttck ttggatgggg tatgaactcc aycctgacaa atggacagta 
    1021 cagcctatac agctgccaga caaagatagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa actgggcaag tcagatttac ccaggaatta aagtaaggca actttgtaaa 
    1141 ctccttagrg gggccaaagc actaacagac atagtaccac taactgaaga agcagaatta 
    1201 gaattggcag agaacaggga aatyctaaaa gaaccagtac atggggtata ttatgaccca 
    1261 tcaaaagakt tgatagctga aatacagaaa caagggcatg ac
//
last modified: Tue May 31 10:56 2022


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