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LOCUS HM635477 1302 bp RNA linear VRL 31-JUL-2011
DEFINITION HIV-1 clone 1376_081606 from Malawi pol protein (pol) gene, partial
cds
ACCESSION HM635477
VERSION HM635477.1 GI:338227734
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Fogel,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Initiation of antiretroviral treatment in women after delivery can
induce multiclass drug resistance in breastfeeding HIV-infected
infants.
JOURNAL Clin. Infect. Dis.. 52(8); 1069-76 (2011)
PUBMED 21460326
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Lidstrom,J., Li,Q., Taha,T.E., Hoover,D.R., Kumwenda,N.I.,
Mofenson,L.M., Kumwenda,J.J., Fowler,M.G., Thigpen,M.C. and
Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (07-JUL-2010) Pathology, Johns Hopkins Univ. School of
Medicine, 720 Rutland Ave., Ross Bldg 646, Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="1376"
/host="Homo sapiens"
/db_xref="taxon:11676"
/clone="1376_081606"
/country="Malawi"
/collection_date="16-Aug-2006"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="AEI90838.1"
/db_xref="GI:338227735"
/translation="PQITLWQRPLVSIKVGGQIKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQIVIEICGKKAIGTVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTAICDEMEKEGKITKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEXQLGIPHPAGLXQKKSVTVLDVGDAYFSVP
LDEEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRAQNTD
IVICQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGFTTPDKKXQKEPPFXWMGYELH
PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGAKALTDIV
PLTEEAELELAENREILKEPVHGVYYDPSKXLIAEIQKQGHD"
BASE COUNT 511 a 216 c 278 g 288 t 9 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctg gtctcaataa aagtaggggg ccaaataaag
61 gaagctctct tagacacagg agcagatgat acagtattag aagaaataaa tttgccaggg
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat
181 caaatagtta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctacc
241 cctgtcaaca taattggaag gaatatgttg actcagcttg gatgcacact aaattttcca
301 attagtccca ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agagaaaata aaagcattaa cagcaatttg tgatgaaatg
421 gaaaaggaag gaaaaattac caagattggc cctgaaaatc catataacac tccagtattt
481 gccataaaaa agaaagacag tactaagtgg agaaaattgg tagatttcag ggaactaaat
541 aaaagaactc aagacttttg ggagrttcaa ttaggaatac cacacccagc agggttaara
601 cagaaaaaat cagtgacagt attagatgtg ggagatgcat atttctcagt tcctttagat
661 gaagaattta gaaaatatac tgcattcacc atacctagta taaacaatga gacaccaggg
721 attagatatc aatataatgt aytgccacag ggatggaaag gatcaccagc aatattccag
781 gctagcatga caaaaatctt agagcccttt agggcgcaaa atacagacat agtcatctgc
841 caatacatgg atgacttgta tgtaggatct gacttagaga taggacaaca tagagcaaaa
901 atagaggagt taagggaaca tctattaaag tggggattta ccacaccaga caagaaayat
961 cagaaagaac ccccatttck ttggatgggg tatgaactcc aycctgacaa atggacagta
1021 cagcctatac agctgccaga caaagatagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa actgggcaag tcagatttac ccaggaatta aagtaaggca actttgtaaa
1141 ctccttagrg gggccaaagc actaacagac atagtaccac taactgaaga agcagaatta
1201 gaattggcag agaacaggga aatyctaaaa gaaccagtac atggggtata ttatgaccca
1261 tcaaaagakt tgatagctga aatacagaaa caagggcatg ac
//
last modified: Tue May 31 10:56 2022